v0.14.3
1600 Commits
| Author | SHA1 | Message | Date | |
|---|---|---|---|---|
 github-actions[bot]
|
b46ce37f6c |
chore: bump version to 0.14.3
Create Release / release (push) Has been cancelled
|
||
|
github-actions[bot]
|
d8d62756fe |
Update Intake Authoring Governance preset to v0.3.0 (#3788)
Update intake-authoring-governance preset submitted by @hindermath to: - presets/catalog.community.json (version, download_url, documentation, description, provides, tags, updated_at) - docs/community/presets.md community presets table Closes #3780 Assisted-by: GitHub Copilot (model: claude-sonnet-4.6, autonomous) Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> |
||
|
Faqeha Noor
|
9602ad2edf |
fix(copilot): honor preset command template overrides (#3592)
* fix(copilot): honor preset command template overrides * fix(copilot): resolve canonical preset command names --------- Co-authored-by: Faqeha Noor <faqehanoor022@gmail.com> |
||
|
orize
|
39f2ac3c63 |
clarify: require real interrogatives, ban topic-label questions (#3745)
* clarify: require real interrogatives, ban topic-label questions Agents often present topic labels or bare requirement ids as "questions", which are not answerable on their own. Require a full interrogative under **Question:**, a plain-language stake sentence, then Recommended/options. Co-authored-by: Cursor <cursoragent@cursor.com> * Update templates/commands/clarify.md * clarify: allow requirement ids only after the ? Resolves Copilot feedback: an interrogative ending in ? cannot also have a parenthesized id "at the end of the question." Exact format is now `**Question:** <interrogative>?` or `**Question:** <interrogative>? (FR-023)`. Co-authored-by: Cursor <cursoragent@cursor.com> --------- Co-authored-by: Lorin O'Brien <lorin@pronto.net> Co-authored-by: Cursor <cursoragent@cursor.com> |
||
|
Eric X Engstfeld
|
7fc5b236c8 |
feat: Add Alquimia AI integration (#2734)
* Add alquimia-ai as new integration: https://alquimia.ai * Fix test cases for alquimia-ai integration. Add alquimia-ai to workflow.yml * Add install url to alquimia-ai integration * Renamed alquimia-ai to alquimia (cli native denomination) * Fix unit tests for alquimia integration * Minor fix in alquimia integration * Fix typos and copilot findings * Potential fix for pull request finding Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com> * Potential fix for pull request finding Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com> * Update tests cases and lint formatting * Final fixes * Rename alquimia_ai to alquimia module integration * Make cli optional for alquimiia integration * resolve review comments * Fix copilot review * Minor fixes: naming, remove unused code * Update tests cases. Fix issues * Fix unit tests * Add alquimia context to default agent-context extension. Update cli requirment to support workflows * Fix hints (suggestion) * Add Alquimia AI as agent in github issue template. Fix unit tests * Address review comments. Update docs * Update test cases --------- Co-authored-by: Eric Engstfeld <ericengstfeld@Erics-MacBook-Pro.local> Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com> |
||
|
Pascal THUET
|
118062eac4 |
harden: secure extension and preset archive downloads (#3141)
* harden: secure extension and preset archive downloads Adopt the shared download-security primitives from #3140 across extension and preset catalog, package, direct-URL, and ZIP-install flows: - bound catalog, package, and inline manifest reads; - verify catalog SHA-256 values when present; - replace path-only extraction with bounded traversal/symlink-safe extraction; - validate malformed hosts and ports before opening download URLs; - handle normalized trailing-backslash directory entries consistently. Redirect enforcement and checksum verification remain owned by the shared helpers already on main; this commit wires them into extension and preset behavior. Assisted-by: OpenAI Codex (model: GPT-5, autonomous) * harden: close archive and catalog download edge cases Preflight ZIP central directories before ZipFile allocates them, bound both declared and actual payload sizes, and reject ambiguous or non-portable archive paths before extraction. Keep extension update manifest selection consistent with extraction, reject unsafe catalog-derived output filenames and malformed URL types, and escape untrusted values in download errors. Add regression coverage for parser differentials, collisions, platform-specific filenames, bounded call sites, and failure ordering. Assisted-by: OpenAI Codex (model: GPT-5, autonomous) * harden: address download security review feedback Assisted-by: OpenAI Codex (model: GPT-5, autonomous) * harden: close ZIP preflight review gaps Assisted-by: OpenAI Codex (model: GPT-5, autonomous) * fix: harden extension update preflight and rollback Assisted-by: OpenAI Codex (model: GPT-5, autonomous) * fix: harden extension update rollback Assisted-by: OpenAI Codex (model: GPT-5, autonomous) |
||
|
Quratulain-bilal
|
0117a7b977 |
fix: correct Optional type annotation for context_note parameter (#3765)
The context_note parameter in CommandRegistrar methods was annotated as \str = None\ which is a type lie — the default is None but the type hint says str. Static type checkers (mypy/pyright) would flag this as an error. Changed to \Optional[str] = None\ for correctness, consistent with how extension_id (same class) is already typed. |
||
|
Noor ul ain
|
2355fcb350 |
Update AGENTS.md (#2626)
* docs: layer contributor-onboarding sections onto AGENTS.md Rebased onto current main and reworked so the additions match the current architecture rather than the stale base this branch was written against. The original revision documented the retired Windsurf integration and a CLI-managed `context_file` field that no longer exists (context files are now owned by the opt-in agent-context extension), and described the manifest at the wrong path with a non-existent API. This version keeps all current AGENTS.md content unchanged and adds four onboarding-focused sections, verified against the code: - Quickstart — Add a New Integration in 5 Steps (links into the existing step-by-step section; notes context files are extension-owned) - IntegrationManifest — File Tracking (correct path .specify/integrations/<key>.manifest.json and real API: record_file / record_existing / hash-guarded uninstall) - Error Handling and Debugging (symptom/cause/fix table + debug tips) - Contribution Checklist Purely additive (+88 lines, no deletions); all internal anchors resolve. Assisted-by: Claude Opus 4.8 (model: claude-opus-4-8, autonomous) Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * Potential fix for pull request finding Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com> * Potential fix for pull request finding Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com> --------- Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com> Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com> |
||
|
Noor ul ain
|
98c9e67ce2 |
fix(extensions): tolerate non-string catalog name in display-name lookup (#3747)
* fix(extensions): tolerate non-string catalog name in display-name lookup
_resolve_catalog_extension() filters catalog search results by display
name with `ext["name"].lower() == argument.lower()`. Extension catalog
JSON is user-editable, so a hand-authored non-string name (e.g.
`name: 123`) crashes the filter with `AttributeError: 'int' object has
no attribute 'lower'`, taking down `extension info <name>` and
`extension add <name>`. A missing `name` key would likewise KeyError.
Coerce defensively with `str(ext.get("name", "")).lower()`, matching the
ambiguous-match display block just below (which already str()-coerces
name for the same reason). A bad-named entry simply doesn't match,
yielding a clean not-found error instead of a traceback.
Adds a regression test invoking `extension info <name>` against a
mocked catalog whose search result has `name: 123`; it fails pre-fix
with AttributeError.
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
* Potential fix for pull request finding
Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>
* Potential fix for pull request finding
Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>
---------
Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>
|
||
|
Noor ul ain
|
6136706ef3 |
fix(presets): coerce non-string catalog tags before joining (#3743)
* fix(presets): coerce non-string catalog tags before joining Preset catalog payloads are user-editable YAML/JSON, so a `tags:` list can legitimately contain non-strings (e.g. numeric tags). The preset list/search/info display paths and the catalog search backend joined tags with a raw `", ".join(...)` / used `t.lower()`, which raised `TypeError: sequence item N: expected str instance, int found` (or `AttributeError` on `.lower()`) and crashed the command. Sibling command surfaces already guard this — extensions, integrations, and workflows coerce with `str(t) for t in ...`. This aligns presets: - `_commands.py`: `preset list`, `preset search`, and both `preset info` branches now join `str(t) for t in ...`. - `__init__.py` `PresetCatalog.search`: tag filter uses `str(t).lower()` and the searchable-text join coerces tags to `str`. Adds regression tests driving `preset search` and `preset info` through CliRunner with numeric tags; both fail before the fix with the TypeError. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * Potential fix for pull request finding Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com> --------- Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com> Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com> |
||
|
Marsel Safin
|
683bfd00c9 |
fix: register extensions for the active integration only (#3459)
* fix: register extensions for the active integration only extension add registered commands for every detected agent, and integration upgrade back-filled enabled extensions for non-active integrations. Maintainer direction on #2948: treat the project as single-active. Only the active integration gets extension artifacts; use/switch rescaffold the target when the user selects it. - extension add now routes through the all-agents pass restricted to the active integration (only_agent), keeping detection and missing-skills-dir recovery safeguards. Projects without recorded init-options fall back to detection-based registration. - integration upgrade re-registers extensions only when upgrading the active integration, reversing the #2886 back-fill for non-active targets at maintainer request. Fixes #2948 Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix: address review feedback on active-only extension registration - Restrict the extension-add active-integration fallback to projects with no recorded active key at all. A recorded but unsupported key (e.g. "generic", deliberately excluded from AGENT_CONFIGS) no longer falls back to registering every detected agent. - Apply the same single-active rule to preset command overrides: PresetManager._register_commands now scopes registration to the active integration via only_agent. - Add PresetManager.register_enabled_presets_for_agent, mirroring ExtensionManager.register_enabled_extensions_for_agent, and call it from integration use/switch/upgrade (active only) alongside the existing extension re-registration so presets are rescaffolded on activation instead of being written for inactive integrations. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix: address second round of review feedback (priority order, fail-closed, docs) - register_enabled_presets_for_agent now processes presets in reverse priority order (lowest-precedence first) so the highest-precedence preset is written last and actually wins after `integration use` rescaffolds two overlapping preset command overrides. Verified this reproduces the previously reported reversed-priority bug and that the fix resolves it. - _register_commands_for_active_agent now checks for the "ai" key's presence separately from its value: a missing key still falls back to detection-based registration for all agents, but a recorded, malformed value (non-string or empty, e.g. [] or null) now fails closed (registers nothing) instead of being treated as "no active integration" or reaching AGENT_CONFIGS.get() with an unhashable key and raising TypeError. - Updated docs/reference/presets.md and docs/reference/integrations.md to describe active-only preset/extension registration and clarify that `integration use`/`switch` is the activation point for installed extensions and presets, and that `upgrade` only re-registers them for the active integration. Adds regression tests: two enabled presets overriding the same command with different priorities (priority winner must survive `use` rescaffolding), and a malformed recorded `ai` value ([]) for `extension add`. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix: address third round of review feedback (multi-integration semantics) Fixes five deeper active-only registration bugs surfaced by Copilot review after 2486c08, all in the presets/extensions single-active integration rule (#2948): 1. presets: _reconcile_composed_commands (run after install/remove) bypassed the active-only filter entirely, writing composition-winner command files for every detected non-skill agent via register_commands_for_non_skill_agents. Added an only_agent param to that registrar method (mirroring register_commands_for_all_agents) and threaded it through all 5 reconciliation call sites. 2. presets: `integration use copilot` with --skills (ai_skills: true) wrote both the static .agent.md command file AND the SKILL.md mirror for the same override. Mirrored the extension path's ai_skills guard in both _register_commands and the reconciliation pass: a command-backed active agent running in skills mode is excluded from non-skill command registration. 3. presets: registered_skills was a flat list, so switching between two skill-mode agents (e.g. Claude -> Codex) and then removing the preset only restored the currently active agent's directory, permanently orphaning the other. _unregister_skills now restores every existing skill-mode agent directory instead of only the active one. 4. extensions: load_init_options() collapses "no file" and "corrupted file" into the same {}, so the round-2 fail-closed fix didn't actually distinguish them. Added a shared resolve_active_agent_for_registration() helper in _init_options.py that checks file existence separately from parse success, returning a distinct sentinel for "file absent" vs None for "corrupted or invalid". extensions/__init__.py now uses this helper. 5. presets: same corruption-collapsing bug in _register_commands's active_agent resolution. Now uses the same shared helper as (4). Adds regression tests for all five: reconciliation active-only filtering, copilot --skills dual-write prevention, multi-skill-agent switch+remove, and corrupted init-options fail-closed behavior for both extension add and preset add. Each test was verified to fail against the pre-fix code and pass with the fix. Targeted (883) and full (3923 passed, 109 skipped) suites pass; ruff check clean. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix: address fourth round of review feedback (skill registration provenance) Replace the "enumerate every skill-mode directory and restore all of them" approach from the previous round with precise per-agent provenance tracking, per reviewer feedback that the enumerate-and-restore-everything design was unsound: - registered_skills changes from a flat List[str] to Dict[str, List[str]] (agent name -> skill names actually written), mirroring the shape registered_commands already uses. _register_skills now returns this per-agent mapping instead of a bare list, and every call site (register_enabled_presets_for_agent, install_from_directory, the _reconcile_skills "was this skill previously managed" check) is updated to read/merge the new shape. Legacy flat-list registry entries from before this change are still readable: writes self-migrate the format, and _normalize_registered_skills() handles the transitional read paths. - _unregister_skills now restores exactly the agent directories recorded for a preset instead of guessing at every skill-mode integration that happens to exist on disk. This fixes two problems with the old enumerate-everything design: (1) it could silently overwrite or delete another preset's (or a user's) override in an agent directory the current preset never actually touched, and (2) it depended on transient per-process integration state (_skills_mode), which is unset in a fresh CLI invocation for mode-selectable integrations like Copilot --skills, permanently orphaning their overrides after a process restart. Registries written before this change (flat list, no agent provenance) fall back to best-effort restoration under only the currently active agent, matching the pre-existing guarantee level. - Every directory resolved from persisted provenance is now validated through the project's shared symlink/containment guard (_ensure_safe_shared_directory) before any file in it is read, written, or removed, since restoration may target an agent that isn't currently active and its directory can't be assumed safe just because a name was recorded for it. - _tracked_skill_agent_dirs() (the enumeration helper introduced last round) is removed; it's superseded by the provenance-based design. Adds regression tests: a symlinked skills directory is rejected during removal; removing one preset does not disturb a different preset's override in another agent's directory; and a Copilot --skills registration installed, then removed after switching agents in a fresh PresetManager instance (simulating a new process), is still correctly restored. Updates existing skill-registration assertions across test_presets.py and test_integration_claude.py for the new per-agent registry shape. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix: address fifth round of review feedback (symlink presence, rescaffold reconciliation, shared skills dir) - _init_options.py: resolve_active_agent_for_registration() now treats a dangling init-options.json symlink as present (path.is_symlink() check alongside path.exists()), since Path.exists() follows symlinks and returns False for a broken one. Previously a broken symlink fell back to the legacy "no file" path and registered every detected agent instead of failing closed. - presets/__init__.py (register_enabled_presets_for_agent): the integration use/switch rescaffold path now collects affected command names across all presets processed and runs _reconcile_composed_commands/_reconcile_skills once after the loop, matching install/remove. Previously rescaffolding wrote each preset's raw content directly with no follow-up reconciliation, so a project-level override (the highest-priority layer) could be clobbered by a lower-precedence preset after switching agents. - presets/__init__.py (_unregister_skills): multiple integrations can share one physical skills directory (agy/codex/zed all resolve to .agents/skills). Provenance restoration now groups recorded agent entries by resolved directory and restores each physical directory exactly once, preferring the currently active agent's renderer when it owns that directory (otherwise any recorded owner, chosen deterministically). Previously each recorded agent key triggered its own restore pass against the same directory, with whichever agent was iterated last silently winning regardless of which agent was active. Adds regression tests for each: a dangling init-options.json symlink failing closed for both preset resolution and extension add; integration use rescaffold preserving a project override over a lower-priority preset; and a codex/agy shared-directory removal restoring the directory exactly once in the active agent's format. Targeted (tests/integrations/test_integration_subcommand.py, tests/test_presets.py, tests/test_extensions.py, tests/test_extension_skills.py, tests/integrations/test_integration_opencode.py, tests/integrations/test_integration_claude.py): 930 passed. Full suite: 3930 passed, 109 skipped. ruff check: clean on files touched by this change. Refs #2948 Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix: guard skill subdirectories and active-agent scoping in preset reconciliation Fix 4 issues from round-6 review of the active-only integration registration work (#2948): - remove(): removed_cmd_names only collected primary command names from registered_commands + manifest aliases, missing commands that were only ever registered via skills mode (ai_skills guard returns no command names for command-backed integrations in skills mode). This skipped reconciliation entirely when removing a higher-priority skills-mode preset, causing _unregister_skills() to fall back to core/extension content instead of the surviving lower-priority preset's override. Now every command template's primary name is added to removed_cmd_names unconditionally. - _reconcile_composed_commands(): the "composed is None" branch (fires when no replace-strategy layer remains for a command, e.g. after removing a wrap/append preset's base) called unregister_commands() across every configured non-skill agent, ignoring only_agent. This deleted historical artifacts from integrations that were never active for the preset. Now filtered by only_agent like the rest of the file. - Added _validate_skill_subdir() helper (reusing _ensure_safe_shared_directory/_validate_safe_shared_directory from shared_infra.py) and applied it at every site that reads or writes an individual skill subdirectory (_register_skills, _unregister_skills_in_dir, _reconcile_skills' override_skills restoration loop). _safe_skills_dir_for_agent only validated the parent skills directory; a symlinked leaf subdirectory (e.g. .claude/skills/speckit-specify) would slip past that check since is_dir()/exists() follow symlinks, letting write_text/rmtree operate through it to an arbitrary location outside the project. Added regression tests: removing a higher-priority skills-only preset restores the surviving lower-priority preset's content; composed-is-None unregistration only touches the active agent; symlinked skill subdirectory rejected on restore; symlinked skill subdirectory rejected on write. Targeted (934) and full (3934 passed, 109 skipped) test suites and ruff check pass clean. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix: persist command registration before fallible skills phase on rescaffold Fix remaining round-6 review findings on the active-only integration registration work (#2948): - register_enabled_presets_for_agent(): registered_commands and registered_skills were merged and persisted together in a single registry.update() call after both the commands and skills phases ran. If _register_skills() raised, the per-preset try/except swallowed it before that update() call was reached, even though _register_commands() had already written a real command file to disk. That file became untracked, so preset removal could no longer clean it up. install_from_directory() already persists registered_commands immediately after the commands phase, before starting the independently fallible skills phase; rescaffold now does the same. - test_presets.py: renamed a misleading claude_dir variable (pointing at Gemini's command directory) in test_composed_none_unregister_respects_active_agent to reuse the existing gemini_commands_dir variable already defined earlier in the same test. Added regression test test_rescaffold_persists_commands_before_fallible_skills_phase: simulates a skills-phase failure during rescaffold and asserts the command file already written to disk is still tracked in registered_commands. Verified all other round-6 findings (preset active-integration scoping, preset reconciliation/remove paths, skills-mode switching, override precedence during rescaffold, skill-subdirectory symlink safety) are already addressed by prior commits in this branch; re-checked each against current code before concluding no further change was needed. Targeted (tests/test_presets.py, tests/test_extensions.py: 689 passed) and full (3935 passed, 109 skipped) suites and ruff check on changed files pass clean. Assisted-by: GitHub Copilot (model: Claude Sonnet 5, autonomous) Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix: unregister stale opposite-mode preset artifact on same-agent skills toggle Fix an Important gap in register_enabled_presets_for_agent() surfaced by quality review (#2948): toggling ai_skills for the *same already-active* command-backed agent (e.g. `integration upgrade copilot` after flipping ai_skills, with copilot staying active throughout) left a stale artifact from the previous mode behind, violating the command/skill mutual- exclusion invariant this PR otherwise enforces. - command -> skills: _register_commands()'s ai_skills guard makes the commands phase a no-op, but the previously-written command file (e.g. .agent.md) and its registered_commands[agent] entry were never cleaned up, so it lingered alongside the newly written SKILL.md. - skills -> command: _get_skills_dir() stops resolving a skills directory once ai_skills is off, making the skills phase a no-op, but the previously-written SKILL.md and its registered_skills[agent] entry were never cleaned up, so it lingered alongside the newly (re)written command file. register_enabled_presets_for_agent() now resolves once per call whether agent_name is a command-backed integration (extension != "/SKILL.md") and the current ai_skills state, then narrowly unregisters the stale opposite- mode entry for that agent via the existing _unregister_commands / _unregister_skills helpers before persisting updated tracking — mirroring the same per-agent, per-preset isolation already used elsewhere in this method. Native skill-only agents (claude, codex, ...) are unaffected: they have no command/skill toggle, so registered_commands and registered_skills legitimately co-exist for them by design. The trailing reconciliation pass, project-override precedence, and per-preset partial-failure isolation are all unchanged. Added red-first regression tests exercising the real install + register_enabled_presets_for_agent rescaffold path in both toggle directions: - test_rescaffold_toggle_command_to_skills_removes_stale_command_file - test_rescaffold_toggle_skills_to_command_removes_stale_skill_file Both failed against the prior code (stale artifact persisted / registry still tracked it) and pass after the fix. Targeted (tests/test_presets.py, tests/test_extensions.py: 691 passed) and full (3937 passed, 109 skipped) suites and ruff check on changed files pass clean. Assisted-by: GitHub Copilot (model: Claude Sonnet 5, autonomous) Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix: migrate legacy flat-list registered_skills on rescaffold even when unchanged Fix a valid finding from GitHub Copilot's review of HEAD b9d9053 (#2948): register_enabled_presets_for_agent() normalizes a legacy flat-list registered_skills value (predating per-agent provenance) to the {agent_name: [...]} dict shape in memory via _normalize_registered_skills, but the persistence check only compared the two *normalized* forms. When the freshly rescaffolded skill names are identical to what the legacy list already held — the common case, since nothing about the preset or skill actually changed — that comparison is a no-op and registry.update() is skipped, leaving the *raw* on-disk value as the un-migrated flat list. A later switch to a different skill-mode agent and removal then follows _unregister_skills's legacy best-effort path (restore only the currently active agent's directory) instead of the per-agent provenance path, permanently orphaning the first agent's override. Fix: track the raw (pre-normalization) existing value and force persistence whenever it's a non-empty list, independent of whether the normalized content changed. Traced registered_commands for the same class of bug: its registry value has always been Dict[str, List[str]] (no legacy flat-list format ever existed for it — the existing `if not isinstance(existing_commands, dict): existing_commands = {}` guard is not a lossy migration path), so this fix stays scoped to registered_skills only. Added red-first regression test test_rescaffold_migrates_legacy_flat_list_registered_skills: installs a preset, overwrites its registry entry with a raw legacy flat list, rescaffolds the *same* active agent with unchanged skill names, and asserts the raw registry is migrated to per-agent dict form. Extends the scenario with a switch to a second skill-mode agent and preset removal to prove both agents' directories restore cleanly instead of orphaning the first. Failed against the prior code (raw value stayed a list) and passes after the fix. Targeted (tests/test_presets.py, tests/test_extensions.py: 692 passed) and full (3938 passed, 109 skipped) suites and ruff check on changed files pass clean. Assisted-by: GitHub Copilot (model: Claude Sonnet 5, autonomous) Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix: reconcile before fallible skills phase, infer legacy skill provenance, and unregister stale extension artifacts on toggle Three findings from the Copilot review on HEAD b9d9053/3a1e749: 1. `register_enabled_presets_for_agent()` only recorded a preset's command names into `affected_cmd_names` (the set later passed to `_reconcile_composed_commands`/`_reconcile_skills`) in the loop that ran *after* `_register_skills()`, inside the same per-preset `try` block. If `_register_skills` raised, the `except` caught it and `continue`d before that loop ever ran — so a preset whose commands phase already wrote real content to disk never got reconciled against the full priority stack, leaving its raw content in place instead of a project override or higher-precedence preset's content. Fix: record the manifest's command names immediately after the commands phase succeeds and persists, before calling the independently fallible `_register_skills()`. 2. The legacy flat-list `registered_skills` migration (added for the previous review round) attributed every name in the list to whichever agent was currently being (re)activated. If the first operation after upgrading from a pre-#2948 registry was a direct switch to a *different* skill-mode agent (e.g. a legacy Claude override, then `integration use codex` with no intervening Claude rescaffold), the migrated dict only recorded `{"codex": [...]}`, permanently losing Claude's actual provenance and orphaning its override on later removal. Fix: added `_infer_legacy_skill_provenance()`, which probes every configured skill-mode agent's directory (via the same safe, symlink-validated helpers already used for restore/removal) for a `SKILL.md` whose frontmatter records this exact preset as the owner (`metadata.source == "preset:<pack_id>"`). A name found under more than one directory is attributed to every matching agent (the preset may have been active while the user switched between several skill-mode agents before provenance tracking existed); names that can't be matched to any directory still fall back to the previously-active best-effort behaviour. Directory grouping for shared-path aliases (e.g. agy/codex/zed all resolving to `.agents/skills`) intentionally does not call `.resolve()` on the path, since doing so diverges from `project_root`'s own resolution state on platforms where a path component is itself a symlink (e.g. macOS's `/var` -> `/private/var`) and made every subsequent containment check spuriously fail. 3. `register_enabled_extensions_for_agent()` has the same command/skill mutual-exclusion gap the preset path had (fixed in a previous round): toggling `ai_skills` for the *same active* agent left the opposite mode's artifact behind. Command -> skills left the extension's `.agent.md` file and its `registered_commands[agent]` entry in place once `skills_mode_active` made the commands phase a no-op. Skills -> command left the extension's `SKILL.md` file in place, since an empty `_register_extension_skills()` result (because this agent's skills directory no longer resolves once `ai_skills` is off) was treated as "nothing to register" rather than "this was rendered here before and is now stale". This diverges from the preset path in one respect: `registered_skills` for extensions has always been a flat list with no per-agent provenance (extension skills are only ever rendered for the active agent, never per-preset-per-agent tracked), so the fix resolves ownership by checking which of the extension's tracked skill names still exist as directories under this specific agent's directory before removing them — mirroring the same technique `unregister_agent_artifacts` already uses for full agent deactivation, but scoped narrowly to firing only when a toggle is actually detected (`skills_mode_active` / `command_mode_active`), so a same-mode re-run never disturbs already-correct artifacts or a user's manual customizations. Regression tests (all confirmed red before their respective fix, green after): - tests/test_presets.py::TestPresetSkills::test_rescaffold_reconciles_override_even_when_skills_phase_fails - tests/test_presets.py::TestPresetSkills::test_rescaffold_legacy_flat_list_direct_switch_preserves_original_agent - tests/test_extension_skills.py::TestExtensionSkillRegistration::test_rescaffold_toggle_command_to_skills_removes_stale_extension_command_file - tests/test_extension_skills.py::TestExtensionSkillRegistration::test_rescaffold_toggle_skills_to_command_removes_stale_extension_skill_file Verification: tests/test_presets.py + tests/test_extensions.py + tests/test_extension_skills.py (753 passed), tests/integrations/ (1768 passed, 1 skipped), full suite `pytest tests -q` (3942 passed, 109 skipped), `ruff check` on changed files clean. Assisted-by: GitHub Copilot (model: Claude Sonnet 5, autonomous) Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix: broaden legacy skill provenance inference to command-backed agents _infer_legacy_skill_provenance() only probed agents whose registrar config statically declares extension == "/SKILL.md", excluding command-backed agents (e.g. Copilot) that can also render preset overrides as SKILL.md files when ai_skills is enabled. A real preset-owned .github/skills/.../SKILL.md written while Copilot was the active skills-mode agent was therefore never probed and got misattributed entirely to whichever agent activated first after the upgrade, permanently orphaning Copilot's override on later removal. Broaden the candidate set to every configured integration (CommandRegistrar.AGENT_CONFIGS), reusing the existing safe-path helper (_safe_skills_dir_for_agent, itself built on the shared _get_skills_dir resolver) rather than inventing new path-construction logic. The existing preset-marker match (metadata.source == "preset:<pack_id>") continues to gate every attribution, so command-mode agents that never rendered this preset's skill are not falsely attributed. Add red-first regression tests: a legacy flat-list entry owned by Copilot in skills mode, switched directly to Claude with no intervening Copilot rescaffold, now migrates to a per-agent dict covering both agents, and removal restores both agents' files instead of orphaning Copilot's override; plus a negative-case test confirming a command-mode Copilot with no preset-owned skill marker is not falsely attributed during the same migration. Assisted-by: GitHub Copilot (model: Claude Sonnet 5, autonomous) Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix: preserve extension skill tracking for mirrors in other agent dirs The skills -> command toggle cleanup in register_enabled_extensions_for_agent() recomputed the remaining tracked registered_skills names by checking only the toggling agent's own skills directory. Since registered_skills is a single flat list shared across every agent an extension has ever been activated under (skills are only ever rendered for the active agent, so there is no per-agent registry key), a name whose mirror still existed under a *different*, previously-active agent's directory was incorrectly dropped from tracking as soon as the current agent's own copy was removed. A later full removal only iterates registered_skills, so the orphaned mirror under the other agent's directory was never found or cleaned up. Add _extension_owned_skill_names(), which re-verifies ownership across every configured agent's skills directory (deduped by shared path) the same way the existing _unregister_extension_skills() fallback scan already does, keeping a name only when a SKILL.md with a matching metadata.source == "extension:<id>" marker is found somewhere - read-only, no directory creation, no symlink escape. Use it instead of re-checking only the toggling agent's own directory when recomputing what remains tracked after narrow stale-mirror cleanup. Add a red-first regression test: Auggie is activated in skills mode first (writing a mirror), then Copilot is activated in skills mode (writing its own mirror for the same names), then Copilot toggles to command mode. Before the fix, registered_skills lost both names entirely even though Auggie's mirrors were untouched on disk; after the fix tracking is preserved and a subsequent full removal correctly cleans up Auggie's remaining mirrors too. Assisted-by: GitHub Copilot (model: Claude Sonnet 5, autonomous) Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix: reject symlinked skills-directory escape in extension skill scans _extension_owned_skill_names() and the fast/fallback paths of its sibling _unregister_extension_skills() called skills_candidate.resolve() and then checked children relative to that already-resolved candidate. If the candidate directory itself (e.g. .gemini/skills) was a symlink pointing outside the project root, both the resolve() call and the subsequent containment check silently passed through the symlink instead of rejecting it: - _extension_owned_skill_names() would falsely attribute ownership to a marker-matching SKILL.md living outside the project. - _unregister_extension_skills()'s fast path (an explicit skills_dir, as passed by the toggle-cleanup call site) and its fallback scan (used during full extension removal) would both shutil.rmtree() the external directory, deleting unrelated content outside the project. Fix by validating the candidate directory itself with the existing _validate_safe_shared_directory() shared-infra helper before any probe or delete: it rejects a symlink at any path component (walking down from the project root, including the final component) without ever resolving through it, and is already used elsewhere in the codebase for the same class of shared-directory containment check. Unsafe candidates are skipped/refused rather than followed. Add red-first security regression tests reproducing each of the three call sites with a `.gemini/skills` symlink pointing at an external directory containing a marker-matching SKILL.md and an unrelated precious_file.txt: provenance inference must not attribute the name, and both the explicit-skills_dir fast path and the None-skills_dir fallback scan must leave the external directory and file untouched. Existing valid shared/deduped directory tests (e.g. agy/amp/codex/zed sharing .agents/skills) continue to pass, confirming legitimate shared directories still clean up correctly. Assisted-by: GitHub Copilot (model: Claude Sonnet 5, autonomous) Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * Fix unscoped extension-skill removal and legacy preset provenance on direct remove - _unregister_extension_skills(): omitting skills_dir now always triggers the full multi-directory fallback scan instead of narrowing to the currently active agent's directory. Previously, remove() (the only caller that omits skills_dir) would resolve the active agent's dir and take the scoped fast path, orphaning a previously-active second agent's extension skill mirror during full removal. - PresetManager.remove(): infer legacy flat-list registered_skills provenance (reusing _infer_legacy_skill_provenance from the prior rescaffold fix) before invoking _unregister_skills, so a direct `preset remove` with no intervening rescaffold/switch also restores every previously-active agent's directory instead of only the currently active one. Added regression tests: - test_remove_while_second_agent_still_in_skills_mode_cleans_up_first_agent_mirror - test_remove_infers_legacy_flat_list_provenance_without_prior_rescaffold Assisted-by: GitHub Copilot (model: Claude Sonnet 5, autonomous) Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * Keep unregister_agent_artifacts scoped to its agent when directory is absent ExtensionManager.unregister_agent_artifacts() converted its resolved agent_skills_dir to None whenever that directory didn't exist, before calling _unregister_extension_skills(). After 1d8f9e3, omitting skills_dir means "genuinely unscoped removal": scan every configured agent's directory, reserved for ExtensionManager.remove()'s full project cleanup. Since unregister_agent_artifacts is agent-scoped (used by switch to clean up the previous integration's artifacts), this caused it to delete every other agent's live extension skill mirrors whenever the target agent's own directory happened to be absent, e.g. unregistering an agent that was never activated. Fix: always pass the explicit, agent-scoped skills_dir, even when it doesn't exist on disk, so the fast path is a safe no-op for an absent directory instead of falling back to the all-agents scan. Registry reconciliation (dropping removed names from the flat registered_skills list) now only runs when the agent's directory actually exists, so an absent directory can't be misread as "these names were removed everywhere" and wipe tracking for mirrors that still legitimately live under other agents' directories. Added regression test: - test_unregister_agent_artifacts_stays_scoped_when_agent_dir_absent Assisted-by: GitHub Copilot (model: Claude Sonnet 5, autonomous) Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * Preserve global skill tracking across agents in unregister_agent_artifacts The present-directory branch of ExtensionManager.unregister_agent_artifacts() recomputed "remaining" registered_skills only by checking whether each name still existed under the just-cleaned agent's own directory. registered_skills is a single flat list shared across every agent an extension was ever activated under (skills are only ever rendered for the currently active agent, so there's no per-agent registry key). Repro: auggie and copilot both have mirrors for the same extension; unregister_agent_artifacts("auggie") correctly removes auggie's own mirror, sees the names absent from auggie's (now empty) directory, and stores an empty registered_skills list - even though copilot's mirror is still live on disk and now untracked. A later full remove() then reads an empty registry and leaves copilot's mirror orphaned. Fix: after the agent-scoped cleanup, recompute remaining names with _extension_owned_skill_names(), which scans every safe, configured agent skills directory (not just the one just cleaned) and keeps a name only if a marker-verified SKILL.md for this extension still exists somewhere. This is the same helper already used for the analogous same-agent toggle-cleanup case, so no new abstraction was introduced. Explicit per-agent cleanup, marker ownership verification, and symlink/containment safety are unchanged. Added regression test: - test_unregister_agent_artifacts_preserves_tracking_for_other_agent_mirror Assisted-by: GitHub Copilot (model: Claude Sonnet 5, autonomous) Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * Reconcile every historical agent on preset removal; validate child skill dirs Fixes 3 findings from the Copilot review on HEAD 31c9b97 (#2948): 1. presets/__init__.py: remove()'s command reconciliation only recreated the surviving preset's content for the currently active agent, even though the removed preset's registered_commands could span multiple historical (now-inactive) agents recorded via prior rescaffolds. Now remove() captures every historical agent registered_commands actually targeted (before mutation) and passes it as extra_agents through _reconcile_composed_commands -> _register_for_non_skill_agents / _register_command_from_path -> registrar.register_commands_for_non_ skill_agents, so the active-only restriction for install/use is preserved while post-removal reconciliation restores every touched directory. 2. presets/__init__.py: the analogous gap existed for skills. _unregister_ skills() now returns {skills_dir: renderer_agent} for every directory it actually restored, and _reconcile_skills() accepts extra_skills_dirs to reconcile each of those directories (via a new apply_to_dir() helper), not only the currently active skills directory. _register_skills() gained optional target_dir/target_agent overrides (forcing create_missing_skills off for non-active directories) so a historical directory is only ever restored, never seeded with brand-new skills. 3. extensions/__init__.py: _extension_owned_skill_names() and both the fast and fallback paths of _unregister_extension_skills() validated only the parent skills_dir for symlink escape, then resolved skills_dir / skill_name and checked containment relative to that already-resolved parent. A per-skill child that is itself a symlink to a different, legitimate skill directory within the same (safe) root passed that containment check, so deleting/attributing through the symlink name could destroy or misattribute an unrelated skill reached only via the alias. All three call sites now run the shared _validate_safe_shared_directory() component-wise check against the full skills_dir / skill_name path (not just the parent) before any read or delete, rejecting a symlinked child outright rather than following it, even when its resolved target remains in-bounds. Regression tests added (all confirmed red against pre-fix code, green after): - test_remove_reconciles_command_for_every_historical_agent - test_remove_reconciles_skill_for_every_historical_agent - test_extension_owned_skill_names_rejects_symlinked_child_skill_dir - test_unregister_extension_skills_explicit_dir_rejects_symlinked_child - test_unregister_extension_skills_fallback_rejects_symlinked_child Tests: tests/test_presets.py (361), tests/test_extension_skills.py (69), tests/test_extensions.py (338) all pass; tests/integrations (1768 passed, 1 skipped) pass; full suite 3902 passed / 74 skipped (90 pre-existing, environment-only git-signing tests deselected — confirmed failing identically on the pre-change baseline due to local 1Password SSH-agent signing, unrelated to this change). ruff check clean on all changed files. Assisted-by: GitHub Copilot (model: Claude Sonnet 5, autonomous) Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * Persist historical reconciliation ownership; defer destructive toggle cleanup; validate registry-provided skill names Round 11 review findings (5 comments on HEAD ab6c28c), three root causes: A) Historical-agent reconciliation wrote surviving content to disk but discarded the returned per-agent write map, so the preset's own registered_commands/registered_skills never learned about directories reconciliation restored on its behalf. A later removal of that same preset then orphaned those directories. Added _merge_pack_registered_commands/_merge_pack_registered_skills and wired them into _reconcile_composed_commands and _reconcile_skills's apply_to_dir so every actual write is merged back into the winning preset's registry metadata. B) Command<->skills toggle on an already-active agent deleted the old artifact before the replacement registration ran, in both presets/__init__.py's register_enabled_presets_for_agent and extensions/__init__.py's register_enabled_extensions_for_agent. If the replacement step raised, both artifacts were lost. Deferred the destructive cleanup until after the replacement phase completes without raising (register-new-then-remove-old ordering); the mirror skills->command direction was already safe since the new command file is always registered unconditionally before any cleanup runs. C) _unregister_skills_in_dir and _infer_legacy_skill_provenance joined a registry-provided (untrusted) skill name directly onto a directory before any name-shape validation. An absolute in-project name discards the intended parent directory entirely (Path's "/" operator drops the left side for an absolute right side), letting a corrupted registry entry escape the intended skills subtree while still resolving inside the project root - passing the existing containment/symlink check. Added a centralized _is_safe_registry_skill_name guard (rejecting non-strings, empty strings, absolute paths, multi-component paths, and "."/".." ) and applied it before every path join derived from registry-provided skill names in both functions. Also fixed _infer_legacy_skill_provenance's unmatched-name fallback, which previously still attributed rejected names to fallback_agent even after the loop skipped them. Added red-first regressions for all three root causes, covering: a two-preset historical-command-agent survivor scenario, an analogous skill-agent survivor scenario, injected skills-phase failure during a preset command->skills toggle and the extension equivalent, a direct unit test of the new name-safety guard, an absolute-path escape attempt against _unregister_skills_in_dir, and a false-attribution attempt against _infer_legacy_skill_provenance. Tests: tests/test_presets.py (367 passed), tests/test_extension_skills.py + tests/test_extensions.py (408 passed), tests/integrations (1768 passed, 1 skipped), full suite tests -q deselecting the pre-existing 1Password-signing-affected tests/extensions/git/test_git_extension.py (3909 passed, 74 skipped, 90 deselected). ruff check clean on all changed files. Assisted-by: GitHub Copilot (model: Claude Sonnet 5, autonomous) Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * Verify replacement actually landed before retiring stale toggle artifacts The command<->skills toggle cleanup added for #2948 deferred destructive removal of the old-mode artifact until after the replacement registration call completed without raising. That was necessary but not sufficient: none of _register_skills(), _register_commands(), register_commands_for_agent(), or _register_extension_skills() raise on a missing source template, a safety-validation skip, or a corrupted manifest entry — they simply return an empty or partial result. Treating "did not raise" as "fully replaced" meant a stale artifact could still be deleted (or its tracking dropped) even though its specific replacement never actually landed, leaving neither artifact in place for that logical command/skill. Fix all four affected toggle directions by checking the replacement call's actual return value before allowing any destructive step: - presets command->skills (register_enabled_presets_for_agent): only unregister a stale command name once its corresponding skill name (via the existing _skill_names_for_command() helper) is confirmed present in the skills call's returned names for that agent; the remainder stays tracked and on disk. - presets skills->command (register_enabled_presets_for_agent): only unregister a stale skill name once its corresponding command name is confirmed present in the commands call's returned names for that agent, using the same helper. - extensions skills->command (register_enabled_extensions_for_agent): only remove a skill mirror once the matching command (mapped via the existing HookExecutor._skill_name_from_command() helper) is confirmed present in register_commands_for_agent's returned names. - extensions command->skills (register_enabled_extensions_for_agent): only remove a deferred stale command once its matching skill name is confirmed present in _register_extension_skills()'s returned names. All four reuse the existing command<->skill name-derivation helpers rather than inventing new mapping logic. Registry tracking is updated to retain exactly the unreplaced subset rather than being popped wholesale, so partially-successful toggles leave correct, minimal tracking behind. Added 8 new regression tests (4 presets, 4 extensions) covering both the fully-empty and genuinely-partial result cases for each of the four toggle directions, using real missing-source-file scenarios (not mocked return values) to exercise the actual code paths. Confirmed red before the fix and green after for all 8. Focused (test_presets.py, test_extension_skills.py, test_extensions.py, tests/integrations): 2551 passed, 1 skipped. Full suite (tests, excluding the pre-existing environment-local 1Password-signing git-extension failures): 3917 passed, 74 skipped, 90 deselected. ruff check: clean. Assisted-by: GitHub Copilot (model: Claude Sonnet 5, autonomous) Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * Retire alias command groups on toggle; scope preset cleanup to switched-away agent (#2948) Fixes three current Copilot review findings on HEAD d0d152e: 1. Command->skills toggle cleanup only matched a stale command's own name against the returned replacement skill name. Aliases (CommandRegistrar tracks and returns primary + alias names flattened into one list) never have their own skill rendered -- only the primary command's skill is rendered -- so an alias's name could never match, leaving its command artifact and tracking behind forever even after the primary's replacement landed. Fixed identically in both presets (register_enabled_presets_for_agent) and extensions (register_enabled_extensions_for_agent): build a primary->alias mapping from the manifest, group stale names by primary, and retire/keep the whole group together based solely on whether the primary's skill replacement actually landed. 2. `integration switch` to a not-yet-installed target unregistered the old agent's extension artifacts but had no preset equivalent, so a preset's command overrides (including custom preset commands) and skill mirrors for the deactivated agent lingered as orphans. Added `PresetManager.unregister_agent_artifacts()`, mirroring `ExtensionManager.unregister_agent_artifacts()`: scoped strictly to the given agent, migrates a legacy flat-list `registered_skills` entry via existing on-disk provenance inference before removing anything (so other agents' real ownership is preserved rather than guessed or dropped), and guards against double-processing an artifact through both the commands and skills paths for native SKILL.md agents. Wired via a new `_unregister_presets_for_agent()` helper into the integration switch command's existing old-agent cleanup phase. Added red-first regression tests: - tests/test_presets.py: alias-group retire/keep/partial-multi-group tests for the command->skills toggle; unregister_agent_artifacts scoping tests for commands and legacy-list skill provenance. - tests/test_extension_skills.py: alias-group retire/keep tests for the extension command->skills toggle. - tests/integrations/test_integration_subcommand.py: end-to-end switch test proving a preset's custom command override is cleaned up when switching to a not-yet-installed integration, with tracking updated correctly and the new agent's registration unaffected. All new tests confirmed red (AttributeError / orphaned file assertions) before the fix and green after. Full suite: 3980 passed, 109 skipped. ruff check clean on all changed files. Assisted-by: GitHub Copilot (model: Claude Sonnet 5, autonomous) Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix: track reconciled extension artifacts Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * Fix native skill preset reconciliation Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * Fix shared native skill cleanup Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * Fix partial preset rescaffold tracking Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * Fix preset agent skill lifecycle Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * Clarify preset removal reconciliation Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix(integrations): address upgrade review feedback Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix(presets): reconcile partial command writes Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix: address active artifact cleanup review Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix: defer preset skill cleanup to winning command Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix: track reconciled and partial preset skills Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix: reconcile project overrides to legacy skills Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix: harden preset skill writes and rollback Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix(presets): harden legacy skill restoration Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix(presets): preserve non-owned legacy skills Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix: validate reconciled skill paths Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix(presets): preserve reconciled skill ownership Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix(presets): clean reconciled agent skills Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix: keep legacy cleanup project-local Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix(presets): keep active agent's artifacts in its current mode on remove A partially failed command<->skills toggle leaves stale tracking (registered_commands or registered_skills) for the active agent, and remove() replayed that history regardless of the agent's current mode: - extra_agents re-admitted the active skills-mode agent into command reconciliation, recreating its command file from a surviving lower preset even though only_agent excluded it. - _unregister_skills restored (and _reconcile_skills reapplied) a skill artifact for the active command-mode agent instead of deleting the preset-owned leftover. The active agent's participation is now decided exclusively by its current mode: reconciliation strips it from extra_agents, and removal routes its stale skills through _delete_agent_preset_skills. Historical replay still applies to inactive agents only (#2948). Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix: filter uninstalled-extension commands in reconciliation; allow active-agent layout change with presets Two follow-ups to the upstream-main merge: - Preset reconciliation (_reconcile_composed_commands) now skips extension-scoped commands (speckit.<ext>.<cmd>) whose extension is not installed, at the single chokepoint every install/remove/rescaffold pass funnels through. Registration already refused them, so reconciliation could materialize files no registry entry tracks. The duplicated per-call-site filters collapse into one _extension_installed_for_command helper. - The #3415 layout-change guard predates this PR's agent-scoped preset rescaffold: for the active integration, _register_presets_for_agent now re-registers enabled presets in the new layout and retires the old layout's stale files, so an active-agent command<->skills toggle proceeds and reconciles instead of being rejected. The guard still rejects non-active agents (no rescaffold runs for them) and still fails closed on an unreadable registry. _installed_presets_affecting_agent also understands the per-agent dict shape of registered_skills this PR writes, instead of raising 'malformed'. Regression tests: rescaffold with an uninstalled extension's command, CLI-level legacy<->skills toggle with an installed preset (both directions), secondary-agent rejection, and dict-shaped registered_skills in the guard helper. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix: reject active layout change while a disabled preset owns artifacts The post-upgrade preset rescaffold iterates enabled presets only, and a disabled preset's artifacts are deliberately frozen until removal, so an active-agent command<->skills layout change cannot reconcile them. _installed_presets_affecting_agent now reports each preset's enabled state and the guard rejects the migration while any affected preset is disabled, with re-enable/remove guidance. Enabled presets and non-active rejection behave as before. Regression test: disabled preset blocks the toggle untouched; re-enabling unblocks it and reconciles. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: replace placeholder prefix in two safety comments Comment-only: spell out why skill deletion is restricted to project-local directories (flat/legacy provenance cannot prove home-directory ownership) instead of an undefined placeholder word. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: correct guard-helper docstring to active-only registration model Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix: fail closed on non-list values in per-agent preset provenance A dict-shaped registered_skills/registered_commands entry with a non-list value (e.g. null) left ownership undecidable but read as "no artifacts", letting a layout-changing upgrade proceed on a malformed registry. Validate values are lists and raise _PresetRegistryUnreadableError otherwise, matching the guard's fail-closed contract. Unit test covers both fields. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix: drop eager extension unregister on layout-changing upgrade Unregistering the agent's extension artifacts before re-registration deleted files and registry tracking up front, so a failed or partial re-registration left the extension with no artifacts at all. Retirement of each opposite-mode artifact already belongs to register_enabled_extensions_for_agent's deferred toggle cleanup, which removes an old artifact only after its replacement is confirmed. Also keeps disabled extensions consistent with disabled presets: artifacts stay frozen in place with intact tracking. Regression test corrupts the installed extension manifest so re-registration fails, then asserts the old-layout artifacts and their registry tracking survive the upgrade. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix: rescaffold fallback integration after failed switch rollback When Phase 2 of a switch fails, rollback restores another installed integration as the default via _set_default_integration but never re-registered extensions or presets for it. Under active-only registration the fallback may never have received any artifacts (it was installed while another integration was active), and Phase 1 already unregistered the outgoing agent's artifacts — leaving the restored default unusable. Rescaffold both extensions and presets (best-effort) after the fallback default is successfully restored. Regression test: secondary codex install with the git extension, a failing switch to generic, then asserts codex ends up with registered extension artifacts after rollback. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: explain load-bearing pre-create loop in _reconcile_skills The per-skill _validate_skill_subdir(create=True) loop looks like dead code (its result is unused), but it re-creates the tracked skill subdirectories that _unregister_skills just deleted so _register_skills's only-overwrite-existing gate passes during a historical-directory restore. Removing it fails test_skill_reconciliation_preserves_per_directory_names. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix: preserve dashed-description skill tracking Use the shared frontmatter parser when verifying surviving extension skill mirrors so delimiter substrings cannot hide provenance metadata. Assisted-by: GitHub Copilot (model: GPT-5.6 Sol, autonomous) Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix: skip absent extension skills during reconciliation Filter extension-scoped commands before skill reconciliation so historical preset tracking and project overrides cannot recreate artifacts for uninstalled extensions. Assisted-by: GitHub Copilot (model: GPT-5.6 Sol, autonomous) Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix: preserve partial native skill cleanup Coordinate native-skill command cleanup with registered skill coverage per agent and command so partial rescaffolds cannot orphan preset artifacts. Assisted-by: GitHub Copilot (model: GPT-5.6 Sol, autonomous) Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> --------- Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> |
||
|
Noor ul ain
|
42c7230aa9 |
fix(extensions): tolerate non-string tags in catalog search (#3746)
* fix(extensions): tolerate non-string tags in catalog search ExtensionCatalog.search() assumed catalog `tags` were always strings: the tag filter called `t.lower()` and the query path did `" ".join([...] + tags)`. Extension catalog JSON is user-editable, so a hand-authored `tags: [1, 2]` crashed search with AttributeError (tag filter) or TypeError (query join). Coerce defensively by filtering to `isinstance(t, str)` and guarding the tags value as a list, matching the reference-correct sibling in integrations/catalog.py. Non-string tags are now skipped rather than raising. Adds a regression test driving search(tag=...) and search(query=...) against a catalog with mixed string/int tags; both fail pre-fix. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * fix(extensions): also coerce non-string author/name in catalog search The same ExtensionCatalog.search() method had two more string assumptions on user-editable catalog fields: the author filter called `ext_data.get("author", "").lower()` (AttributeError on a numeric author) and the query searchable-text joined `name`/`description` uncoerced (TypeError on a numeric name). Coerce both defensively, matching the reference-correct integrations/catalog.py::search. Extends the regression test with non-string author/name coverage; fails pre-fix with AttributeError at the author filter. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com> |
||
|
Quratulain-bilal
|
e6a3ccfb27 |
fix(extensions): hyphenate command names in 'extension info' listing (#3744)
The 'Commands:' section of 'specify extension info' for a locally installed extension printed each command in its manifest dotted form (e.g. speckit.jira.sync). Cline and Forge register hyphenated command names (/speckit-jira-sync), so on those projects the displayed names did not match what the user actually invokes. Format each name through the active agent's command-name formatter, mirroring the parity 'extension add' already applies to its 'Provided commands' listing (#3669) and completing the Forge/Cline command-name parity from #3641/#3642. Adds a regression test asserting the hyphenated form appears (and the dotted form does not) for a Forge project. |
||
|
Noor ul ain
|
962f9f0765 |
fix(workflows): escape remaining untrusted fields in workflow info (#3731)
* fix(workflows): escape remaining untrusted fields in `workflow info` Follow-up to #3690, which escaped only the step-graph brackets. Every other metadata field `workflow info` prints is untrusted content (workflow.yml or catalog JSON), and console.print has Rich markup enabled, so an unescaped `[...]` in any of them is parsed as a style tag and silently swallowed: - definition path: name, version, author, description, integration, and each input's name/type - catalog path: name, version, description, tags, and the "not found" workflow id A description of `Does [stuff] nicely` rendered as `Does nicely`; an integration of `claude [code]` rendered as `claude `. Route every field through _escape_markup, matching the sibling `workflow list` / catalog `search` commands, so bracketed text renders literally. Add two regression tests covering the definition and catalog paths; both fail on the pre-fix source (fields with brackets come back truncated). Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * test: cover version + not-found-id escapes in workflow info Addresses Copilot review feedback on the workflow-info markup-escape tests: - The definition-path and catalog-path regression tests left `version` bracket-free and never asserted it, so the version escapes could be removed without failing. Use bracketed version values and assert they survive verbatim. - The newly escaped not-found identifier is a separate output path that no test reached. Add a case where local load raises FileNotFoundError and catalog lookup returns None, invoke `workflow info` with a bracketed ID, and assert the literal ID is preserved in the error. Verified each new assertion fails when its source escape is removed (test-the-test). Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com> |
||
|
Ali jawwad
|
c1028e5506 |
fix(extensions): guard non-numeric catalog downloads in search/info rendering (#3710)
* fix(extensions): guard non-numeric catalog downloads in search/info rendering `specify extension search` and `specify extension info <id>` format a catalog entry's `downloads` field with the `:,` thousands separator, guarded only by `is not None`. Catalog payloads are only shape-validated -- individual fields are never type-checked and `_get_merged_extensions` returns raw catalog dicts -- so an entry with a non-numeric `downloads` (e.g. the JSON string "1500", realistic from a community / SPECKIT_CATALOG_URL / project catalog) makes the `:,` format raise `ValueError: Cannot specify ',' with 's'`, aborting the whole command with an uncaught traceback. Group-format `downloads` only when it is actually numeric; otherwise render it as-is. Numeric values (int/float, incl. bool) format identically, so correct catalogs are byte-for-byte unchanged. Every other field in these two renderers is already `str()`-wrapped; this closes the one unguarded field. 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * fix(extensions): escape the non-numeric downloads fallback for Rich markup Address review feedback: the fallback interpolated the untrusted catalog value straight into a Rich-rendered string, so guarding the ``:,`` ValueError just traded it for a MarkupError -- a catalog entry with downloads "[/red]foo" still aborted `extension search`/`info`, and balanced tags could restyle the output. Wrap the fallback in _escape_markup(str(...)) at both sites, matching how every other catalog field in these renderers is already escaped. Numeric values keep the identical ``:,`` branch, so correct catalogs are unchanged. 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com> * fix(extensions): escape 'stars' too, in the same stats string Follow-up to the downloads escaping: `stars` is the other catalog-controlled value joined into the same Rich-rendered stats line, and it was still raw -- verified that stars "[/red]x" raises the same MarkupError and aborts `extension info`/`search`. Hardening one of the two adjacent values would have left the reported defect reachable through the sibling field. 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com> |
||
|
Mateus Cardoso
|
9e150cd3b2 |
fix(agent-context): apply default markers when config markers are blank (bash) (#3736)
When the extension config omits context_markers (or sets them blank),
relying on the built-in defaults, the Bash port aborted with "malformed
config parser output" and never updated the context file, while the
Python (`or DEFAULT_*`) and PowerShell (default-initialized) ports handled
it correctly.
The config parser prints three lines (context_files JSON, marker_start,
marker_end), captured via `_raw_opts="$(...)"`. Command substitution strips
trailing newlines, so blank marker lines collapse the output to fewer than
three, tripping the `(( ${#_opts_lines[@]} < 3 ))` guard and making the
DEFAULT_START/END substitution unreachable — the exact case it was written
for.
Require only the context_files line and default the marker lines to empty
(`${_opts_lines[1]:-}` / `${_opts_lines[2]:-}`) so the existing
DEFAULT_START/END fallback fills them in. Add a parity regression test with
blank markers (it fails on the old guard and passes with the fix).
Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>
|
||
|
Noor ul ain
|
99dc915ae3 |
fix: escape Rich markup in catalog list output (#3738)
The `catalog list` subcommands for workflows, workflow steps, presets, and integrations printed user-editable catalog fields (name/url/ description from the `*-catalogs.yml` files) through `console.print` with Rich markup enabled. Any bracketed content such as a description `Does [stuff] nicely` was parsed as a style tag and silently swallowed, and a malformed tag could raise while rendering. Route each untrusted field through the module's already-imported `escape` helper, matching the pattern already used by `extension catalog list`. Adds regression tests for all four commands that inject bracketed name/url/description and assert the brackets survive verbatim in the output. Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com> |
||
|
Ali jawwad
|
103ad73775 |
fix(workflows): guard non-mapping 'workflow:' block in WorkflowDefinition (#3694)
* fix(workflows): guard non-mapping 'workflow:' block in WorkflowDefinition
A present-but-non-mapping top-level `workflow:` block (bare `workflow:` ->
YAML null, or `workflow: <str>` / `workflow: [..]`) crashed
WorkflowDefinition.__init__ with AttributeError: the `{}` default of
`data.get("workflow", {})` only applies when the key is ABSENT, so a non-dict
value reached `workflow.get("id", ...)`. This fires inside from_yaml/
from_string — before validate_workflow can report the malformed shape — and
in the CLI escapes as a raw traceback (load_workflow is wrapped to catch only
FileNotFoundError/ValueError).
Normalize the local `workflow` to {} when it is not a mapping (self.data keeps
the raw value so validate_workflow still reports it), mirroring the adjacent
default_options guard.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
* test(workflows): assert self.data preserves the raw non-mapping workflow value
Address review: the previous assertion only proved the key stayed present; it
would pass even if construction replaced the malformed value with {}. Assert
definition.data["workflow"] equals the original parsed value and is still a
non-mapping, proving the guard normalizes only the local variable.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
---------
Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
|
||
|
Ali jawwad
|
59e63699b8 |
fix(bundler): reject unsupported schema_version in _merge_config (align readers) (#3711)
bundle-catalogs.yml has two readers that are meant to agree: commands_impl/ catalog_config._read (bundle catalog list/add/remove) and models/catalog. _merge_config (the resolution path feeding bundle search/info/install via load_source_stack). _read rejects an unsupported MAJOR schema_version; _merge_config never checked it, so a file written by a newer/incompatible Spec Kit (e.g. schema_version '2.0') was silently parsed under v1 assumptions on the exact path where install_policy governs trust — the two readers disagreed. #3623 (non-list catalogs) and #3659 (top-level non-mapping) already aligned these two readers guard-by-guard; this is the last unaligned guard. Add the same forward-compatible major-version check to _merge_config. Promote CONFIG_SCHEMA_VERSION to models/catalog.py as the single source of truth and import it in catalog_config.py (was a local duplicate) so the two cannot drift. Absent schema_version stays valid (backward compatible); matching major stays valid. 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com> |
||
|
github-actions[bot]
|
015d125667 |
Update Linear Weave extension to v1.0.1 (#3762)
Update linear-weave extension submitted by @tonydwoodhouse: - extensions/catalog.community.json (version, download_url, documentation, updated_at) Closes #3758 Assisted-by: GitHub Copilot (model: claude-sonnet-4.6, autonomous) Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> |
||
|
github-actions[bot]
|
3ca0eb169e |
Add Intake Sequencing Governance preset to community catalog (#3761)
Add intake-sequencing-governance preset submitted by @hindermath to: - presets/catalog.community.json (alphabetical order) - docs/community/presets.md community presets table Closes #3742 Assisted-by: GitHub Copilot (model: claude-sonnet-4.6, autonomous) Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> |
||
|
github-actions[bot]
|
c6cb25cb4a |
Update Quality Gates (Enforcement Layer) extension to v0.3.3 (#3760)
Update gates extension submitted by @schwichtgit: - extensions/catalog.community.json (version, download_url, updated_at) - docs/community/extensions.md community extensions table (no changes needed) Closes #3755 Assisted-by: GitHub Copilot (model: claude-sonnet-4.6, autonomous) Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> |
||
|
github-actions[bot]
|
eb8108e7b3 |
Update Verify Review Ship extension to v0.4.1 (#3759)
Update verify-review-ship extension submitted by @cadugevaerd to: - extensions/catalog.community.json (version, download_url, sha256, description, requires, provides, tags, updated_at) - docs/community/extensions.md community extensions table Closes #3751 Assisted-by: GitHub Copilot (model: claude-sonnet-4.6, autonomous) Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> |
||
|
Mateus Cardoso
|
403fcdc6fd |
fix(agent-context): discover nested plans in Python port mtime fallback (#3734)
The Python port of update-agent-context reintroduced a one-level plan scan (specs/*/plan.md) in its mtime fallback, while the Bash and PowerShell ports search recursively (specs/**/plan.md) per the fix for issue #3024. The three ports were therefore not in parity: for nested scoped layouts such as specs/<scope>/<feature>/plan.md, the Python port found no plan and omitted the plan link from the managed context section. Switch the fallback to `(root / "specs").rglob("plan.md")` and update the module docstring to match the documented recursive-discovery contract. Add a parity regression test covering the nested layout (it fails on the one-level glob and passes with the recursive scan). Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> |
||
|
Oscar
|
2fb94e0f9c |
fix(extensions): make shipped scripts executable after install (#3723)
Extension archives are unpacked with zipfile.extractall and directory installs are copied; neither restores a stripped Unix mode. A bundled *.sh therefore lands non-executable, so a documented `.specify/extensions/<id>/scripts/bash/foo.sh` invocation fails with "Permission denied" — e.g. a CI step that runs an extension's gate. It only worked incidentally, after a later `specify init`. Restore permissions at the shared sink. Every extension install route funnels through ExtensionManager.install_from_directory (install_from_zip delegates to it; extension add, extension update, and bundle installs all reach it), so calling the existing ensure_executable_scripts() there covers every route — present and future — by construction rather than by patching each command. The helper already makes .specify scripts executable (init, migrate, and integration-install all call it); it is called plainly, re-establishing the same idempotent "scripts are executable" invariant those flows restore. Deliberately the whole-project call rather than a scoped one: a scan-scope argument would only spare re-walking already-correct files — negligible beside the copy/extract just performed — while widening a simple, widely-used interface for a single caller. Existing callers were audited: init's end-of-init call still covers core .specify/scripts and is untouched; integration-install and migrate do no manager install. Nothing is removed. No-op on Windows; best-effort per file; does not change which files are executable or their mode. Tests: a manager-level regression test asserts a mode-0644 script comes out executable via both install_from_directory and install_from_zip(force=True) (the latter also covering the remove-then-reinstall shape of extension update), plus an end-to-end `extension add --dev` test. Both fail without the change; skipped on Windows. Fixes #3722. |
||
|
Manfred Riem
|
446ee329b1 |
docs(assess): clarify the pipeline works on an empty project (#3732)
* docs(assess): clarify the pipeline works on an empty project State explicitly in the README and intake command that the assess pipeline requires no existing source code. An empty, freshly initialized project and an existing codebase are equally valid starting points — the input is just an idea (pasted text, a URL, a ticket, or a codebase pointer). Assisted-by: GitHub Copilot (model: Claude Opus 4.8, autonomous) Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com> Copilot-Session: 9df2615e-6a99-4cdc-b4b2-fc72029bc1d9 * docs(assess): distinguish empty project from no project Clarify that assess still runs inside an initialized Spec Kit project (writing under .specify/assessments/) — only existing source code is optional. Reword 'no repo at all'/'need no repo' to 'need no existing codebase' so users don't expect intake to work outside a Spec Kit project. Assisted-by: GitHub Copilot (model: Claude Opus 4.8, autonomous) Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com> Copilot-Session: 9df2615e-6a99-4cdc-b4b2-fc72029bc1d9 --------- Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com> Copilot-Session: 9df2615e-6a99-4cdc-b4b2-fc72029bc1d9 |
||
|
Manfred Riem
|
c0fe0e43cd |
chore: release 0.14.2, begin 0.14.3.dev0 development (#3730)
* chore: bump version to 0.14.2 * chore: begin 0.14.3.dev0 development --------- Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> |
||
|
github-actions[bot]
|
ae0b8ca2b0 |
Update Intake Review Governance preset to v0.1.1 (#3729)
Update intake-review-governance preset submitted by @hindermath to: - presets/catalog.community.json (version, download_url, documentation, description) - docs/community/presets.md community presets table Closes #3727 Assisted-by: GitHub Copilot (model: claude-sonnet-4.6, autonomous) Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> |
||
|
github-actions[bot]
|
2fe35bf898 |
Update Verify Review Ship extension to v0.3.0 (#3728)
Update verify-review-ship extension submitted by @cadugevaerd: - extensions/catalog.community.json (version, download_url, description, effect, tags, sha256, updated_at) - docs/community/extensions.md community extensions table Closes #3726 Assisted-by: GitHub Copilot (model: claude-sonnet-4.6, autonomous) Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> |
||
|
Dhruv Rastogi
|
73908f798a |
Update Architecture Guard extension to v1.13.1 (#3724)
Update architecture-guard extension submitted by @DyanGalih: - extensions/catalog.community.json (version 1.8.17 -> 1.13.1, download_url, provides.commands 10 -> 14, tags: add hygiene, updated_at) Closes #3564 Assisted-by: GitHub Copilot (model: claude-sonnet-5, autonomous) Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com> |
||
|
Ali jawwad
|
ffe2a7ffd6 |
docs(upgrade): Claude Code files live in .claude/skills, not .claude/commands (#3708)
The Claude Code integration installs skills into `.claude/skills` (see integrations/claude: `"dir": ".claude/skills"`), and the "what gets kept" list earlier in this same doc already says `.claude/skills/`. But three troubleshooting/reference spots still point users at `.claude/commands/`, which does not exist for a Claude Code install -- so the "verify files exist" checks list an empty/missing directory. Correct all three to `.claude/skills/`. 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com> |
||
|
WOLIKIMCHENG
|
ae82c74339 |
fix(kilocode): install commands under .kilo/commands (#3672)
* fix(kilocode): write commands to .kilo/commands * fix: guard Kilo legacy command migration --------- Co-authored-by: root <kinsonnee@gmail.com> |
||
|
Ali jawwad
|
71e6201790 |
fix(auth): normalize whitespace in auth-config env-var/id references at store time (#3691)
* fix(auth): normalize whitespace in auth-config env-var/id references at store time token_env, client_secret_env, tenant_id, and client_id were VALIDATED on their .strip()ed form but STORED raw, so an accidentally padded value passed validation yet silently broke the downstream verbatim os.environ.get(name) / OAuth-URL lookups — load_auth_config succeeded but resolve_token returned None and the request quietly downgraded to unauthenticated (401/403) with no diagnostic. Normalize these whitespace-insignificant string references with a _norm helper at store time, mirroring how `hosts` is already normalized (h.strip().lower()). `token` is unchanged (already stripped at resolve time). 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * test(auth): cover tenant_id/client_id/client_secret_env normalization Address review: the regression test only covered token_env, but the fix also normalizes tenant_id, client_id, and client_secret_env. Add a padded azure-ad entry asserting all three are stored stripped. 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com> |
||
|
Ali jawwad
|
ea6843c1fe |
fix(workflows): guard non-mapping 'inputs:' block in engine._resolve_inputs (#3696)
execute()/resume() run UNVALIDATED definitions (load_workflow does not
validate). WorkflowDefinition stores `inputs` raw, so a non-mapping
`inputs:` block (bare `inputs:` -> None, or `inputs: []`) crashed
_resolve_inputs at `for name, input_def in definition.inputs.items()` with
AttributeError, aborting the whole run.
Return {} when inputs is not a mapping, mirroring validate_workflow's own
`isinstance(definition.inputs, dict)` check. Protects both call sites
(execute and resume); normal dict resolution is unchanged.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
|
||
|
github-actions[bot]
|
b0850c97e6 |
Update Intake Authoring Governance preset to v0.2.0 (#3721)
Update intake-authoring-governance preset submitted by @hindermath to: - presets/catalog.community.json (version, download_url, documentation, description, provides, tags) - docs/community/presets.md community presets table Closes #3720 Assisted-by: GitHub Copilot (model: claude-sonnet-4.6, autonomous) Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> |
||
|
Manfred Riem
|
781a14a6d2 |
docs: clarify shell-step interpolation safety (#3719)
* docs: clarify shell-step interpolation safety
Shell step `run` fields are executed by the system shell and `{{ ... }}`
expressions are substituted as raw, unquoted text. Document that untrusted
sources — workflow `inputs.*` and prior-step output, including AI-generated
`prompt` output — must be quoted, enum-constrained, validated, or gated before
they reach a `run` field.
- docs/reference/workflows.md: add an "Interpolation and shell safety" section.
- workflows/README.md: add a warning under the Shell Steps example, link to the
new section, and quote the `inputs.project_dir` example.
- workflows/PUBLISHING.md: strengthen the interpolation guidance and call out
prior-step/agent output as untrusted.
Assisted-by: GitHub Copilot (model: Claude Opus 4.8, autonomous)
Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com>
Copilot-Session: c0fd6900-69bf-4fcb-b377-de37f98f5835
* docs: correct shell-step interpolation guidance
Address review feedback that the previous wording over-promised. Clarify that
none of the mitigations neutralise a hostile interpolated value:
- Quoting is not a security boundary — there is no shell-escaping filter, and a
value containing the matching quote can break out. Present quoting as
correctness handling for already-constrained values only.
- Remove the "pass data via environment or files" guidance: ShellStep has no
`env` mapping (it only copies the process environment and sets
SPECKIT_WORKFLOW_DIR), so that transport does not exist.
- Drop the claim that routing through a command/prompt step validates or safely
binds a value; it does not.
- Correct the gate guidance: a gate renders only its own message/show_file and
does not inspect, resolve, or sanitise the following step. Authors must
surface the exact command/data in the gate themselves, and approval does not
neutralise an injectable interpolation.
Frame constraining values at the source (enum/allowlist) as the only reliable
control, and keeping unconstrained values out of `run` fields entirely.
Assisted-by: GitHub Copilot (model: Claude Opus 4.8, autonomous)
Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com>
Copilot-Session: c0fd6900-69bf-4fcb-b377-de37f98f5835
* docs: remove unsafe interpolation from example and gate guidance
Address further review feedback:
- workflows/README.md: the shell example interpolated an unconstrained path
into shell source, which contradicted the warning beneath it. Shell steps
already run from the project root, so drop the `cd '{{ inputs.project_dir }}'`
prefix and model a plain `run: "npm test"` with no interpolation.
- docs/reference/workflows.md: GateStep prints `message` verbatim with no
control-character stripping (stripping applies only to `show_file` path and
contents), so recommending that authors surface untrusted data in `message`
was itself unsafe — agent/caller output could inject terminal escapes to
alter or hide the prompt. Direct authors to keep `message` to trusted text
and surface untrusted material via `show_file`, whose contents are stripped.
Assisted-by: GitHub Copilot (model: Claude Opus 4.8, autonomous)
Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com>
Copilot-Session: c0fd6900-69bf-4fcb-b377-de37f98f5835
* docs: use correct prompt-step output key in example
A `prompt` step stores agent-generated text under `output.stdout`, not
`output.value`, so the example expression `{{ steps.plan.output.value }}`
would resolve to None. Reference `output.stdout` so the example correctly
demonstrates untrusted agent output flowing into a shell step.
Assisted-by: GitHub Copilot (model: Claude Opus 4.8, autonomous)
Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com>
Copilot-Session: c0fd6900-69bf-4fcb-b377-de37f98f5835
---------
Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com>
Copilot-Session: c0fd6900-69bf-4fcb-b377-de37f98f5835
|
||
|
github-actions[bot]
|
be0c741ebb |
[extension] Add Blueprint Index — Living Architecture Map extension to community catalog (#3718)
* Add Blueprint Index extension to community catalog Add blueprint-index extension submitted by @ogil109 to: - extensions/catalog.community.json (alphabetical order) - docs/community/extensions.md community extensions table Closes #3628 Assisted-by: GitHub Copilot (model: claude-sonnet-4.6, autonomous) Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * Potential fix for pull request finding Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com> --------- Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> Co-authored-by: Manfred Riem <15701806+mnriem@users.noreply.github.com> Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com> |
||
|
Noor ul ain
|
36754522f7 |
fix(github-http): return None on malformed host in resolve_github_release_asset_api_url (#3715)
Accessing the parsed authority (via urlparse/.hostname) raises ValueError on a malformed bracketed host, e.g. https://[not-an-ip]/..., mirroring the existing .port guard below. download_url is server-controlled (a catalog download_url payload), so the function's resolve-or-return-None contract must hold rather than leaking a raw traceback to the caller. Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com> |
||
|
Ali jawwad
|
391cc0dff8 |
fix(integrations): declare PiIntegration multi_install_safe (#3652)
* fix(integrations): declare PiIntegration multi_install_safe PiIntegration writes only to its isolated, static root .pi/prompts, disjoint from every other integration, yet never declared multi_install_safe — so it inherited the IntegrationBase default False, leaving `specify integration status` in a permanent unsafe-multi-install ERROR state when pi is co-installed alongside another agent. Add `multi_install_safe = True`, mirroring the isolated MarkdownIntegration cohort (qwen, shai, qodercli) and the kiro-cli #3471 fix. The parametrized registry isolation contracts auto-include pi and pass. 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * docs(integrations): list pi in the multi-install-safe reference table Declaring PiIntegration multi_install_safe means the reference table in docs/reference/integrations.md (which states it lists all currently declared multi-install-safe integrations) should include it. Add the alphabetized pi row with its .pi/prompts isolation path. 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com> |
||
|
Manfred Riem
|
1631c0a50f |
harden: remove shell parameter from run_command() (#3716)
run_command() enforces a list[str] argv contract, so a shell parameter served no purpose beyond keeping an unnecessary shell-injection surface that a future refactor could re-enable. Remove the parameter (and its now-dead ValueError guard) so shell=False is the only possible behavior. Assisted-by: GitHub Copilot (model: Claude Opus 4.8, autonomous) Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com> Copilot-Session: 74a1bd02-f6cd-412a-b5a8-a7767a5e058d |
||
|
dependabot[bot]
|
6385250264 |
chore(deps): bump github/codeql-action/init from 4.37.1 to 4.37.3 (#3699)
* chore(deps): bump github/codeql-action/init from 4.37.1 to 4.37.3 Bumps [github/codeql-action/init](https://github.com/github/codeql-action) from 4.37.1 to 4.37.3. - [Release notes](https://github.com/github/codeql-action/releases) - [Changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md) - [Commits](https://github.com/github/codeql-action/compare/7188fc363630916deb702c7fdcf4e481b751f97a...e4fba868fa4b1b91e1fdab776edc8cfbe6e9fb81) --- updated-dependencies: - dependency-name: github/codeql-action/init dependency-version: 4.37.3 dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> * chore(deps): bump github/codeql-action/analyze to 4.37.3 Keep the analyze step in sync with the init step bumped by Dependabot so both CodeQL action references point to the same v4.37.3 commit. Assisted-by: GitHub Copilot (model: Claude Opus 4.8, autonomous) Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com> Copilot-Session: b55c9f98-ef3d-4aee-a68b-c544fc82ae73 --------- Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Manfred Riem <15701806+mnriem@users.noreply.github.com> Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com> Copilot-Session: b55c9f98-ef3d-4aee-a68b-c544fc82ae73 |
||
|
Daniel Graham
|
bfe4772b79 |
fix: auto-correct conflicting feature prefixes (#1829)
Treat an explicit feature number as a preference when an existing spec directory already uses that prefix. Advance to the next available spec prefix and warn without fetching or scanning git branches. Keep Bash, PowerShell, and Python variants aligned. Preserve 64-bit numbering, timestamp mode, dry-run output, matching-file behavior, and exact-directory reuse through the allow-existing option. Assisted-by: Codex (model: GPT-5, autonomous) |
||
|
dependabot[bot]
|
c0ba81190b |
chore(deps): bump actions/checkout from 6.0.3 to 7.0.1 (#3703)
Bumps [actions/checkout](https://github.com/actions/checkout) from 6.0.3 to 7.0.1. - [Release notes](https://github.com/actions/checkout/releases) - [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md) - [Commits](https://github.com/actions/checkout/compare/v6.0.3...3d3c42e5aac5ba805825da76410c181273ba90b1) --- updated-dependencies: - dependency-name: actions/checkout dependency-version: 7.0.1 dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> |
||
|
dependabot[bot]
|
e53ddcb0cc |
chore(deps): bump DavidAnson/markdownlint-cli2-action (#3702)
Bumps [DavidAnson/markdownlint-cli2-action](https://github.com/davidanson/markdownlint-cli2-action) from 24.0.0 to 24.1.0. - [Release notes](https://github.com/davidanson/markdownlint-cli2-action/releases) - [Commits](https://github.com/davidanson/markdownlint-cli2-action/compare/8de2aa07cae85fd17c0b35642db70cf5495f1d25...6bf21b07787794f89a243495939cd651942aeabe) --- updated-dependencies: - dependency-name: DavidAnson/markdownlint-cli2-action dependency-version: 24.1.0 dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> |
||
|
dependabot[bot]
|
769acafcab |
chore(deps): bump actions/setup-node from 6.4.0 to 7.0.0 (#3701)
Bumps [actions/setup-node](https://github.com/actions/setup-node) from 6.4.0 to 7.0.0. - [Release notes](https://github.com/actions/setup-node/releases) - [Commits](https://github.com/actions/setup-node/compare/v6.4.0...820762786026740c76f36085b0efc47a31fe5020) --- updated-dependencies: - dependency-name: actions/setup-node dependency-version: 7.0.0 dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> |
||
|
dependabot[bot]
|
2a397aad6c |
chore(deps): bump astral-sh/setup-uv from 8.3.2 to 9.0.0 (#3700)
Bumps [astral-sh/setup-uv](https://github.com/astral-sh/setup-uv) from 8.3.2 to 9.0.0. - [Release notes](https://github.com/astral-sh/setup-uv/releases) - [Commits](https://github.com/astral-sh/setup-uv/compare/11f9893b081a58869d3b5fccaea48c9e9e46f990...c771a70e6277c0a99b617c7a806ffedaca235ff9) --- updated-dependencies: - dependency-name: astral-sh/setup-uv dependency-version: 9.0.0 dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> |
||
|
Manfred Riem
|
4d3a4281bc |
chore: release 0.14.1, begin 0.14.2.dev0 development (#3698)
* chore: bump version to 0.14.1 * chore: begin 0.14.2.dev0 development --------- Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> |
||
|
github-actions[bot]
|
58f5730dd5 |
Update Agent Parity Governance preset to v0.4.0 (#3697)
Update agent-parity-governance preset submitted by @hindermath: - presets/catalog.community.json (version, download_url, description, documentation, updated_at) - docs/community/presets.md community presets table Closes #3684 Assisted-by: GitHub Copilot (model: claude-sonnet-4.6, autonomous) Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> |
||
|
Ali jawwad
|
52b20f1a82 |
fix(bundler): InstallResult.changed counts uninstalled as a change (#3692)
* fix(bundler): InstallResult.changed counts uninstalled as a change The `changed` property only considered `installed` and `refreshed`, omitting `uninstalled`. A `bundle update` whose new manifest drops components (removing them via the refresh path) with no new install/refresh produces installed=[], refreshed=[], uninstalled=[dropped set] — yet `changed` returned False, misreporting a mutating update as a no-op. Include `uninstalled` in the disjunction (it is the third mutating outcome list on the same dataclass, also the sole output of the remove_bundle path). 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * ci: pin ruff to 0.15.0 to avoid 0.16.0 default-ruleset breakage ruff 0.16.0 expanded its default rule set from ~59 to ~413 rules, causing the unpinned `uvx ruff check` step to report ~1475 pre-existing violations unrelated to this change. Pin to 0.15.0 to restore green lint. Assisted-by: GitHub Copilot (model: Claude Opus 4.8, autonomous) --------- Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com> Co-authored-by: Manfred Riem <15701806+mnriem@users.noreply.github.com> |
||
|
github-actions[bot]
|
579579ba80 |
[preset] Update Cross-Platform Governance preset to v0.2.1 (#3695)
* Update Cross-Platform Governance preset to v0.2.1 Update cross-platform-governance preset submitted by @hindermath to: - presets/catalog.community.json (version, download_url, documentation, description, updated_at) - docs/community/presets.md community presets table Closes #3683 Assisted-by: GitHub Copilot (model: claude-sonnet-4.6, autonomous) Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * ci: pin ruff to 0.15.0 to avoid 0.16.0 default-ruleset breakage ruff 0.16.0 expanded its default rule set from ~59 to ~413 rules, causing the unpinned `uvx ruff check` step to report 1476 pre-existing violations. Pin to 0.15.0 to restore green lint until the codebase is audited against the new defaults. Assisted-by: GitHub Copilot (model: Claude Opus 4.8, autonomous) --------- Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> Co-authored-by: Manfred Riem <15701806+mnriem@users.noreply.github.com> |