Fix Alquimia argument hints after folded descriptions (#4063)

Co-authored-by: root <kinsonnee@gmail.com>

src/specify_cli/integrations/alquimia/__init__.py

@@ -65,7 +65,16 @@ class AlquimiaAIIntegration(SkillsIntegration):
 
     @staticmethod
     def inject_argument_hint(content: str, hint: str) -> str:
-        """Insert ``argument-hint`` after the first ``description:`` in YAML frontmatter.
+        """Insert ``argument-hint`` after the ``description:`` scalar in YAML frontmatter.
+
+        A long ``description`` gets folded by the YAML dumper across
+        indented continuation lines (plain or quoted), and an embedded
+        paragraph break can add unindented blank lines inside a quoted
+        scalar. Inserting the new line right after the *first* line of
+        that scalar — instead of after the whole scalar — either produces
+        invalid YAML or gets silently absorbed into the description
+        string (#4044), so every continuation line (indented, or blank)
+        is skipped first.
 
         Skips injection if ``argument-hint:`` already exists in the
         frontmatter to avoid duplicate keys.
@@ -88,15 +97,29 @@ class AlquimiaAIIntegration(SkillsIntegration):
         in_fm = False
         dash_count = 0
         injected = False
-        for line in lines:
+        i = 0
+        n = len(lines)
+        while i < n:
+            line = lines[i]
             stripped = line.rstrip("\n\r")
             if stripped == "---":
                 dash_count += 1
                 in_fm = dash_count == 1
                 out.append(line)
+                i += 1
                 continue
             if in_fm and not injected and stripped.startswith("description:"):
                 out.append(line)
+                i += 1
+                # Skip folded/quoted continuation lines before inserting
+                # so the new key lands after the description scalar ends.
+                # Blank lines count too: PyYAML emits unindented blank
+                # lines for embedded "\n\n" inside a quoted scalar.
+                while i < n and (
+                    lines[i][:1] in (" ", "\t") or lines[i].rstrip("\r\n") == ""
+                ):
+                    out.append(lines[i])
+                    i += 1
                 # Preserve the exact line-ending style (\r\n vs \n)
                 if line.endswith("\r\n"):
                     eol = "\r\n"
@@ -109,6 +132,7 @@ class AlquimiaAIIntegration(SkillsIntegration):
                 injected = True
                 continue
             out.append(line)
+            i += 1
         return "".join(out)
 
     @staticmethod

tests/integrations/test_integration_alquimia.py

@@ -471,6 +471,101 @@ class TestAlquimiaArgumentHints:
         hint_count = sum(1 for ln in lines if ln.startswith("argument-hint:"))
         assert hint_count == 1
 
+    def test_inject_argument_hint_survives_folded_description(self):
+        """A long description folded across lines must not corrupt the YAML (#4044).
+
+        A description long enough for the YAML dumper to fold it into a
+        multi-line plain scalar previously had ``argument-hint:`` spliced
+        into the *middle* of that scalar, producing invalid YAML.
+        """
+        from specify_cli.integrations.alquimia import AlquimiaAIIntegration
+
+        frontmatter = {
+            "name": "speckit-specify",
+            "description": (
+                "Create or update the feature specification from a natural "
+                "language feature description. Also accepts an issue URL "
+                "resolved via gh CLI (demo customization)."
+            ),
+            "compatibility": "Requires spec-kit project structure with .specify/ directory",
+        }
+        frontmatter_text = yaml.safe_dump(
+            frontmatter, sort_keys=False, allow_unicode=True
+        ).strip()
+        content = f"---\n{frontmatter_text}\n---\n\nBody text\n"
+        assert "\n  " in content, "fixture description must actually fold across lines"
+
+        result = AlquimiaAIIntegration.inject_argument_hint(
+            content, "Describe the feature"
+        )
+
+        parsed = yaml.safe_load(result.split("---")[1])
+        assert parsed["argument-hint"] == "Describe the feature"
+        assert parsed["description"] == frontmatter["description"]
+
+    def test_inject_argument_hint_survives_quoted_folded_description(self):
+        """A folded description forced into quotes must not absorb the hint (#4044)."""
+        from specify_cli.integrations.alquimia import AlquimiaAIIntegration
+
+        frontmatter = {
+            "name": "speckit-specify",
+            "description": (
+                "Create or update the feature specification from a natural "
+                "language feature description. Also accepts a GitHub "
+                "issue/PR URL or #N reference resolved via gh CLI (demo)."
+            ),
+            "compatibility": "Requires spec-kit project structure with .specify/ directory",
+        }
+        frontmatter_text = yaml.safe_dump(
+            frontmatter, sort_keys=False, allow_unicode=True
+        ).strip()
+        content = f"---\n{frontmatter_text}\n---\n\nBody text\n"
+        assert "\n  " in content, "fixture description must actually fold across lines"
+
+        result = AlquimiaAIIntegration.inject_argument_hint(
+            content, "Describe the feature"
+        )
+
+        parsed = yaml.safe_load(result.split("---")[1])
+        assert parsed["argument-hint"] == "Describe the feature"
+        assert parsed["description"] == frontmatter["description"]
+
+    def test_inject_argument_hint_survives_multi_paragraph_description(self):
+        """A description with an embedded blank line must not absorb the hint.
+
+        PyYAML serializes an embedded ``\\n\\n`` inside a quoted scalar as
+        unindented blank lines, not indented ones, so a fix that only skips
+        indented continuation lines still fails on this case.
+        """
+        from specify_cli.integrations.alquimia import AlquimiaAIIntegration
+
+        frontmatter = {
+            "name": "speckit-specify",
+            "description": (
+                "First paragraph of a fairly long description that will "
+                "need to wrap across multiple lines when dumped by PyYAML."
+                "\n\n"
+                "Second paragraph continues the description after a blank "
+                "line separator to force embedded newlines in the scalar."
+            ),
+            "compatibility": "Requires spec-kit project structure with .specify/ directory",
+        }
+        frontmatter_text = yaml.safe_dump(
+            frontmatter, sort_keys=False, allow_unicode=True
+        ).strip()
+        content = f"---\n{frontmatter_text}\n---\n\nBody text\n"
+        assert "\n\n" in frontmatter_text, (
+            "fixture must produce a blank continuation line"
+        )
+
+        result = AlquimiaAIIntegration.inject_argument_hint(
+            content, "Describe the feature"
+        )
+
+        parsed = yaml.safe_load(result.split("---")[1])
+        assert parsed["argument-hint"] == "Describe the feature"
+        assert parsed["description"] == frontmatter["description"]
+
 
 class TestAlquimiaDisableModelInvocation:
     """Verify disable-model-invocation is false for Alquimia skills."""