* DOCS: Modernize Fitting a Linear Simulation with XGBoost notebook
- Replace deprecated shap.TreeExplainer().shap_values() with shap.TreeExplainer()(X) returning Explanation objects
- Replace shap.summary_plot() with shap.plots.bar() and shap.plots.beeswarm()
- Replace shap.dependence_plot() with shap.plots.scatter()
- Fix XGBoost API: move early_stopping_rounds to constructor
- Remove notebook from allow_to_timeout in scripts/run_notebooks_timeouts.py
- Remove notebook from nbcheckorder exclude list in .pre-commit-config.yaml
- Add depth-3 model SHAP explanation section for comparison
Closes#3036
* [pre-commit.ci] auto fixes from pre-commit.com hooks
for more information, see https://pre-commit.ci
* docs(notebook): add SHAP beeswarm and scatter plots for XGBoost depth comparison
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Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Vibhor Kumar
0c247eff38