/* * QUANTCONNECT.COM - Democratizing Finance, Empowering Individuals. * Lean Algorithmic Trading Engine v2.0. Copyright 2014 QuantConnect Corporation. * * Licensed under the Apache License, Version 2.0 (the "License"); * you may not use this file except in compliance with the License. * You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by applicable law or agreed to in writing, software * distributed under the License is distributed on an "AS IS" BASIS, * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. * See the License for the specific language governing permissions and * limitations under the License. * */ using System; using Python.Runtime; using NUnit.Framework; using QuantConnect.Python; namespace QuantConnect.Tests.Python { [TestFixture, Category("TravisExclude")] public class PythonPackagesTests { [Test] public void PyvinecopulibTest() { AssertCode( @" import pyvinecopulib as pv import numpy as np def RunTest(): np.random.seed(1234) # seed for the random generator n = 1000 # number of observations d = 5 # the dimension mean = np.random.normal(size=d) # mean vector cov = np.random.normal(size=(d, d)) # covariance matrix cov = np.dot(cov.transpose(), cov) # make it non-negative definite x = np.random.multivariate_normal(mean, cov, n) # Transform copula data using the empirical distribution u = pv.to_pseudo_obs(x) # Fit a Gaussian vine # (i.e., properly specified since the data is multivariate normal) controls = pv.FitControlsVinecop(family_set=[pv.BicopFamily.gaussian]) cop = pv.Vinecop(u, controls=controls) # Sample from the copula n_sim = 1000 u_sim = cop.simulate(n_sim, seeds=[1, 2, 3, 4]) # Transform back simulations to the original scale x_sim = np.asarray([np.quantile(x[:, i], u_sim[:, i]) for i in range(0, d)]) # Both the mean and covariance matrix look ok! [mean, np.mean(x_sim, 1)] [cov, np.cov(x_sim)]"); } [Test, Explicit("Needs to be run byitself to avoid exception on init: A colormap named \"cet_gray\" is already registered.")] public void HvplotTest() { AssertCode( @" import numpy as np import pandas as pd import hvplot.pandas def RunTest(): index = pd.date_range('1/1/2000', periods=1000) df = pd.DataFrame(np.random.randn(1000, 4), index=index, columns=list('ABCD')).cumsum() df.head() pd.options.plotting.backend = 'holoviews' df.plot()"); } [Test] public void StumpyTest() { AssertCode( @" import stumpy import numpy as np def RunTest(): your_time_series = np.random.rand(1000) window_size = 10 # Approximately, how many data points might be found in a pattern stumpy.stump(your_time_series, m=window_size)"); } [Test] public void RiverTest() { AssertCode( @" from river import datasets def RunTest(): datasets.Phishing()"); } [Test] public void BokehTest() { AssertCode( @" from bokeh.plotting import figure, output_file, show def RunTest(): # output to static HTML file output_file(""line.html"") p = figure(width=400, height=400) # add a circle renderer with a size, color, and alpha p.circle([1, 2, 3, 4, 5], [6, 7, 2, 4, 5], size=20, color=""navy"", alpha=0.5) # show the results show(p)"); } [Test] public void LineProfilerTest() { AssertCode( @" from line_profiler import LineProfiler import random def RunTest(): def do_stuff(numbers): s = sum(numbers) l = [numbers[i]/43 for i in range(len(numbers))] m = ['hello'+str(numbers[i]) for i in range(len(numbers))] numbers = [random.randint(1,100) for i in range(1000)] lp = LineProfiler() lp_wrapper = lp(do_stuff) lp_wrapper(numbers) lp.print_stats()"); } [Test] public void FuzzyCMeansTest() { AssertCode( @" import numpy as np from fcmeans import FCM from matplotlib import pyplot as plt def RunTest(): n_samples = 3000 X = np.concatenate(( np.random.normal((-2, -2), size=(n_samples, 2)), np.random.normal((2, 2), size=(n_samples, 2)) )) fcm = FCM(n_clusters=2) fcm.fit(X) # outputs fcm_centers = fcm.centers fcm.predict(X)"); } [Test] public void MdptoolboxTest() { AssertCode( @" import mdptoolbox.example def RunTest(): P, R = mdptoolbox.example.forest() vi = mdptoolbox.mdp.ValueIteration(P, R, 0.9) vi.run() vi.policy"); } [Test] public void NumerapiTest() { AssertCode( @" import numerapi def RunTest(): napi = numerapi.NumerAPI(verbosity=""warning"") napi.get_leaderboard()"); } [Test] public void StockstatsTest() { AssertCode( @" import pandas as pd import stockstats def RunTest(): d = {'date': [ '20220901', '20220902' ], 'open': [ 1, 2 ], 'close': [ 1, 2 ],'high': [ 1, 2], 'low': [ 1, 2 ], 'volume': [ 1, 2 ] } df = pd.DataFrame(data=d) stock = stockstats.wrap(df)"); } [Test] public void HurstTest() { AssertCode( @" import numpy as np import matplotlib.pyplot as plt from hurst import compute_Hc, random_walk def RunTest(): # Use random_walk() function or generate a random walk series manually: # series = random_walk(99999, cumprod=True) np.random.seed(42) random_changes = 1. + np.random.randn(99999) / 1000. series = np.cumprod(random_changes) # create a random walk from random changes # Evaluate Hurst equation H, c, data = compute_Hc(series, kind='price', simplified=True)"); } [Test] public void PolarsTest() { AssertCode( @" import polars as pl def RunTest(): df = pl.DataFrame({ ""A"": [1, 2, 3, 4, 5], ""fruits"": [""banana"", ""banana"", ""apple"", ""apple"", ""banana""], ""cars"": [""beetle"", ""audi"", ""beetle"", ""beetle"", ""beetle""], }) df.sort(""fruits"")"); } [Test] public void TensorflowProbabilityTest() { AssertCode( @" import tensorflow as tf import tensorflow_probability as tfp def RunTest(): # Pretend to load synthetic data set. features = tfp.distributions.Normal(loc=0., scale=1.).sample(int(100e3)) labels = tfp.distributions.Bernoulli(logits=1.618 * features).sample() # Specify model. model = tfp.glm.Bernoulli() # Fit model given data. coeffs, linear_response, is_converged, num_iter = tfp.glm.fit( model_matrix=features[:, tf.newaxis], response=tf.cast(labels, dtype=tf.float32), model=model)"); } [Test] public void MpmathTest() { AssertCode( @" from mpmath import sin, cos def RunTest(): sin(1), cos(1)"); } [Test] public void LimeTest() { AssertCode( @" from __future__ import print_function import sklearn import sklearn.datasets import sklearn.ensemble import numpy as np import lime import lime.lime_tabular np.random.seed(1) def RunTest(): iris = sklearn.datasets.load_iris() train, test, labels_train, labels_test = sklearn.model_selection.train_test_split(iris.data, iris.target, train_size=0.80) rf = sklearn.ensemble.RandomForestClassifier(n_estimators=500) rf.fit(train, labels_train) sklearn.metrics.accuracy_score(labels_test, rf.predict(test)) explainer = lime.lime_tabular.LimeTabularExplainer(train, feature_names=iris.feature_names, class_names=iris.target_names, discretize_continuous=True)" ); } [Test] public void ShapTest() { AssertCode( @" import xgboost import numpy as np import shap def RunTest(): # simulate some binary data and a linear outcome with an interaction term # note we make the features in X perfectly independent of each other to make # it easy to solve for the exact SHAP values N = 2000 X = np.zeros((N,5)) X[:1000,0] = 1 X[:500,1] = 1 X[1000:1500,1] = 1 X[:250,2] = 1 X[500:750,2] = 1 X[1000:1250,2] = 1 X[1500:1750,2] = 1 X[:,0:3] -= 0.5 y = 2*X[:,0] - 3*X[:,1] Xd = xgboost.DMatrix(X, label=y) model = xgboost.train({ 'eta':1, 'max_depth':3, 'base_score': 0, ""lambda"": 0 }, Xd, 1) print(""Model error ="", np.linalg.norm(y-model.predict(Xd))) print(model.get_dump(with_stats=True)[0]) # make sure the SHAP values add up to marginal predictions pred = model.predict(Xd, output_margin=True) explainer = shap.TreeExplainer(model) shap_values = explainer.shap_values(Xd) np.abs(shap_values.sum(1) + explainer.expected_value - pred).max() shap.summary_plot(shap_values, X)" ); } [Test] public void MlxtendTest() { AssertCode( @" import numpy as np import matplotlib.pyplot as plt import matplotlib.gridspec as gridspec import itertools from sklearn.linear_model import LogisticRegression from sklearn.svm import SVC from sklearn.ensemble import RandomForestClassifier from mlxtend.classifier import EnsembleVoteClassifier from mlxtend.data import iris_data from mlxtend.plotting import plot_decision_regions def RunTest(): # Initializing Classifiers clf1 = LogisticRegression(random_state=0) clf2 = RandomForestClassifier(random_state=0) clf3 = SVC(random_state=0, probability=True) eclf = EnsembleVoteClassifier(clfs=[clf1, clf2, clf3], weights=[2, 1, 1], voting='soft') # Loading some example data X, y = iris_data() X = X[:,[0, 2]] # Plotting Decision Regions gs = gridspec.GridSpec(2, 2) fig = plt.figure(figsize=(10, 8)) labels = ['Logistic Regression', 'Random Forest', 'RBF kernel SVM', 'Ensemble'] for clf, lab, grd in zip([clf1, clf2, clf3, eclf], labels, itertools.product([0, 1], repeat=2)): clf.fit(X, y) ax = plt.subplot(gs[grd[0], grd[1]]) fig = plot_decision_regions(X=X, y=y, clf=clf, legend=2) plt.title(lab) plt.show()" ); } [Test, Explicit("Hangs if run along side the rest")] public void IgniteTest() { AssertCode( $@" import ignite def RunTest(): assert(ignite.__version__ == '0.4.10')" ); } [Test, Explicit("Sometimes hangs when run along side the other tests")] public void TensorlyTest() { AssertCode( @" import tensorly as tl from tensorly import random def RunTest(): tensor = random.random_tensor((10, 10, 10)) # This will be a NumPy array by default tl.set_backend('pytorch') # TensorLy now uses TensorLy for all operations tensor = random.random_tensor((10, 10, 10)) # This will be a PyTorch array by default tl.max(tensor) tl.mean(tensor) tl.dot(tl.unfold(tensor, 0), tl.transpose(tl.unfold(tensor, 0)))" ); } [Test] public void SpacyTest() { AssertCode( @" import spacy from spacy.lang.en.examples import sentences def RunTest(): nlp = spacy.load(""en_core_web_md"") doc = nlp(sentences[0]) print(doc.text)" ); } [Test] public void PyEMDTest() { AssertCode( @" import numpy as np import PyEMD def RunTest(): s = np.random.random(100) emd = PyEMD.EMD() IMFs = emd(s)" ); } [Test] public void RipserTest() { AssertCode( @" import numpy as np import ripser import persim def RunTest(): data = np.random.random((100,2)) diagrams = ripser.ripser(data)['dgms'] persim.plot_diagrams(diagrams, show=True)" ); } [Test] public void AlphalensTest() { AssertCode( @" import alphalens import pandas def RunTest(): tickers = ['A', 'B', 'C', 'D', 'E', 'F'] factor_groups = {'A': 1, 'B': 1, 'C': 1, 'D': 2, 'E': 2, 'F': 2} daily_rets = [1, 1, 2, 1, 1, 2] price_data = [[daily_rets[0]**i, daily_rets[1]**i, daily_rets[2]**i, daily_rets[3]**i, daily_rets[4]**i, daily_rets[5]**i] for i in range(1, 5)] # 4 days start = '2015-1-11' factor_end = '2015-1-13' price_end = '2015-1-14' # 1D fwd returns price_index = pandas.date_range(start=start, end=price_end) price_index.name = 'date' prices = pandas.DataFrame(index=price_index, columns=tickers, data=price_data) factor = 2 factor_index = pandas.date_range(start=start, end=factor_end) factor_index.name = 'date' factor = pandas.DataFrame(index=factor_index, columns=tickers, data=factor).stack() # Ingest and format data factor_data = alphalens.utils.get_clean_factor_and_forward_returns( factor, prices, groupby=factor_groups, quantiles=None, bins=True, periods=(1,))" ); } [Test] public void NumpyTest() { AssertCode( @" import numpy def RunTest(): return numpy.pi" ); } [Test] public void ScipyTest() { AssertCode( @" import scipy import numpy def RunTest(): return scipy.mean(numpy.array([1, 2, 3, 4, 5]))" ); } [Test] public void SklearnTest() { AssertCode( @" from sklearn.ensemble import RandomForestClassifier def RunTest(): return RandomForestClassifier()" ); } [Test] public void CvxoptTest() { AssertCode( @" import cvxopt def RunTest(): return cvxopt.matrix([1.0, 2.0, 3.0, 4.0, 5.0, 6.0], (2,3))" ); } [Test] public void TalibTest() { AssertCode( @" import numpy import talib def RunTest(): return talib.SMA(numpy.random.random(100))" ); } [Test] public void CvxpyTest() { AssertCode( @" import numpy import cvxpy def RunTest(): numpy.random.seed(1) n = 10 mu = numpy.abs(numpy.random.randn(n, 1)) Sigma = numpy.random.randn(n, n) Sigma = Sigma.T.dot(Sigma) w = cvxpy.Variable(n) gamma = cvxpy.Parameter(nonneg=True) ret = mu.T*w risk = cvxpy.quad_form(w, Sigma) return cvxpy.Problem(cvxpy.Maximize(ret - gamma*risk), [cvxpy.sum(w) == 1, w >= 0])" ); } [Test] public void StatsmodelsTest() { AssertCode( @" import numpy import statsmodels.api as sm def RunTest(): nsample = 100 x = numpy.linspace(0, 10, 100) X = numpy.column_stack((x, x**2)) beta = numpy.array([1, 0.1, 10]) e = numpy.random.normal(size=nsample) X = sm.add_constant(X) y = numpy.dot(X, beta) + e model = sm.OLS(y, X) results = model.fit() return results.summary()" ); } [Test] public void PykalmanTest() { AssertCode( @" import numpy from pykalman import KalmanFilter def RunTest(): kf = KalmanFilter(transition_matrices = [[1, 1], [0, 1]], observation_matrices = [[0.1, 0.5], [-0.3, 0.0]]) measurements = numpy.asarray([[1,0], [0,0], [0,1]]) # 3 observations kf = kf.em(measurements, n_iter=5) return kf.filter(measurements)" ); } [Test] public void AesaraTest() { AssertCode( @" import aesara def RunTest(): a = aesara.tensor.vector() # declare variable out = a + a ** 10 # build symbolic expression f = aesara.function([a], out) # compile function return f([0, 1, 2])" ); } [Test] public void XgboostTest() { AssertCode( @" import numpy import xgboost def RunTest(): data = numpy.random.rand(5,10) # 5 entities, each contains 10 features label = numpy.random.randint(2, size=5) # binary target return xgboost.DMatrix( data, label=label)" ); } [Test] public void ArchTest() { AssertCode( @" import numpy from arch import arch_model def RunTest(): r = numpy.array([0.945532630498276, 0.614772790142383, 0.834417758890680, 0.862344782601800, 0.555858715401929, 0.641058419842652, 0.720118656981704, 0.643948007732270, 0.138790608092353, 0.279264178231250, 0.993836948076485, 0.531967023876420, 0.964455754192395, 0.873171802181126, 0.937828816793698]) garch11 = arch_model(r, p=1, q=1) res = garch11.fit(update_freq=10) return res.summary()" ); } [Test] public void KerasTest() { AssertCode( @" import numpy from keras.models import Sequential from keras.layers import Dense, Activation def RunTest(): # Initialize the constructor model = Sequential() # Add an input layer model.add(Dense(12, activation='relu', input_shape=(11,))) # Add one hidden layer model.add(Dense(8, activation='relu')) # Add an output layer model.add(Dense(1, activation='sigmoid')) return model" ); } [Test, Explicit("Installed in specific environment. Requires older tensorflow")] public void TensorforceTests() { PythonInitializer.ActivatePythonVirtualEnvironment("/Foundation-Tensorforce"); AssertCode(@" from tensorforce import Agent, Environment def RunTest(): # Pre-defined or custom environment environment = Environment.create( environment='gym', level='CartPole', max_episode_timesteps=500 ) # Instantiate a Tensorforce agent agent = Agent.create( agent='tensorforce', environment=environment, # alternatively: states, actions, (max_episode_timesteps) memory=10000, update=dict(unit='timesteps', batch_size=64), optimizer=dict(type='adam', learning_rate=3e-4), policy=dict(network='auto'), objective='policy_gradient', reward_estimation=dict(horizon=20) ) # Train for 50 episodes for _ in range(50): # Initialize episode states = environment.reset() terminal = False while not terminal: # Episode timestep actions = agent.act(states=states) states, terminal, reward = environment.execute(actions=actions) agent.observe(terminal=terminal, reward=reward) agent.close() environment.close()"); } [Test] public void TensorflowTest() { AssertCode( @" import tensorflow as tf def RunTest(): mnist = tf.keras.datasets.mnist (x_train, y_train), (x_test, y_test) = mnist.load_data() x_train, x_test = x_train / 255.0, x_test / 255.0 model = tf.keras.models.Sequential([ tf.keras.layers.Flatten(input_shape=(28, 28)), tf.keras.layers.Dense(128, activation='relu'), tf.keras.layers.Dropout(0.2), tf.keras.layers.Dense(10) ]) model(x_train[:1]).numpy()" ); } [Test] public void DeapTest() { AssertCode( @" import numpy from deap import algorithms, base, creator, tools def RunTest(): # onemax example evolves to print list of ones: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1] numpy.random.seed(1) def evalOneMax(individual): return sum(individual), creator.create('FitnessMax', base.Fitness, weights=(1.0,)) creator.create('Individual', list, typecode = 'b', fitness = creator.FitnessMax) toolbox = base.Toolbox() toolbox.register('attr_bool', numpy.random.randint, 0, 1) toolbox.register('individual', tools.initRepeat, creator.Individual, toolbox.attr_bool, 10) toolbox.register('population', tools.initRepeat, list, toolbox.individual) toolbox.register('evaluate', evalOneMax) toolbox.register('mate', tools.cxTwoPoint) toolbox.register('mutate', tools.mutFlipBit, indpb = 0.05) toolbox.register('select', tools.selTournament, tournsize = 3) pop = toolbox.population(n = 50) hof = tools.HallOfFame(1) stats = tools.Statistics(lambda ind: ind.fitness.values) stats.register('avg', numpy.mean) stats.register('std', numpy.std) stats.register('min', numpy.min) stats.register('max', numpy.max) pop, log = algorithms.eaSimple(pop, toolbox, cxpb = 0.5, mutpb = 0.2, ngen = 30, stats = stats, halloffame = hof, verbose = False) # change to verbose=True to see evolution table return hof[0]" ); } [Test] public void QuantlibTest() { AssertCode( @" import QuantLib as ql def RunTest(): todaysDate = ql.Date(15, 1, 2015) ql.Settings.instance().evaluationDate = todaysDate spotDates = [ql.Date(15, 1, 2015), ql.Date(15, 7, 2015), ql.Date(15, 1, 2016)] spotRates = [0.0, 0.005, 0.007] dayCount = ql.Thirty360() calendar = ql.UnitedStates() interpolation = ql.Linear() compounding = ql.Compounded compoundingFrequency = ql.Annual spotCurve = ql.ZeroCurve(spotDates, spotRates, dayCount, calendar, interpolation, compounding, compoundingFrequency) return ql.YieldTermStructureHandle(spotCurve)" ); } [Test] public void CopulaTest() { AssertCode( @" from copulas.univariate.gaussian import GaussianUnivariate import pandas as pd def RunTest(): data=pd.DataFrame({'feature_01': [5.1, 4.9, 4.7, 4.6, 5.0]}) feature1 = data['feature_01'] gu = GaussianUnivariate() gu.fit(feature1) return gu" ); } [Test] public void HmmlearnTest() { AssertCode( @" import numpy as np from hmmlearn import hmm def RunTest(): # Build an HMM instance and set parameters model = hmm.GaussianHMM(n_components=4, covariance_type='full') # Instead of fitting it from the data, we directly set the estimated # parameters, the means and covariance of the components model.startprob_ = np.array([0.6, 0.3, 0.1, 0.0]) # The transition matrix, note that there are no transitions possible # between component 1 and 3 model.transmat_ = np.array([[0.7, 0.2, 0.0, 0.1], [0.3, 0.5, 0.2, 0.0], [0.0, 0.3, 0.5, 0.2], [0.2, 0.0, 0.2, 0.6]]) # The means of each component model.means_ = np.array([[0.0, 0.0], [0.0, 11.0], [9.0, 10.0], [11.0, -1.0]]) # The covariance of each component model.covars_ = .5 * np.tile(np.identity(2), (4, 1, 1)) # Generate samples return model.sample(500)" ); } [Test, Explicit("Installed in specific environment. Requires older numpy")] public void PomegranateTest() { PythonInitializer.ActivatePythonVirtualEnvironment("/Foundation-Pomegranate"); AssertCode( @" from pomegranate import * def RunTest(): d1 = NormalDistribution(5, 2) d2 = LogNormalDistribution(1, 0.3) d3 = ExponentialDistribution(4) d = IndependentComponentsDistribution([d1, d2, d3]) X = [6.2, 0.4, 0.9] return d.log_probability(X)" ); } [Test] public void LightgbmTest() { AssertCode( @" import lightgbm as lgb import numpy as np import pandas as pd from scipy.special import expit def RunTest(): # Simulate some binary data with a single categorical and # single continuous predictor np.random.seed(0) N = 1000 X = pd.DataFrame({ 'continuous': range(N), 'categorical': np.repeat([0, 1, 2, 3, 4], N / 5) }) CATEGORICAL_EFFECTS = [-1, -1, -2, -2, 2] LINEAR_TERM = np.array([ -0.5 + 0.01 * X['continuous'][k] + CATEGORICAL_EFFECTS[X['categorical'][k]] for k in range(X.shape[0]) ]) + np.random.normal(0, 1, X.shape[0]) TRUE_PROB = expit(LINEAR_TERM) Y = np.random.binomial(1, TRUE_PROB, size=N) return { 'X': X, 'probability_labels': TRUE_PROB, 'binary_labels': Y, 'lgb_with_binary_labels': lgb.Dataset(X, Y), 'lgb_with_probability_labels': lgb.Dataset(X, TRUE_PROB), }" ); } [Test] public void FbProphetTest() { AssertCode( @" import pandas as pd from prophet import Prophet def RunTest(): df=pd.DataFrame({'ds': ['2007-12-10', '2007-12-11', '2007-12-12', '2007-12-13', '2007-12-14'], 'y': [9.590761, 8.519590, 8.183677, 8.072467, 7.893572]}) m = Prophet() m.fit(df) future = m.make_future_dataframe(periods=365) return m.predict(future)" ); } [Test] public void FastAiTest() { AssertCode( @" from fastai.text import * def RunTest(): return 'Test is only importing the module, since available tests take too long'" ); } [Test] public void PyramidArimaTest() { AssertCode( @" import numpy as np import pmdarima as pm from pmdarima.datasets import load_wineind def RunTest(): # this is a dataset from R wineind = load_wineind().astype(np.float64) # fit stepwise auto-ARIMA stepwise_fit = pm.auto_arima(wineind, start_p=1, start_q=1, max_p=3, max_q=3, m=12, start_P=0, seasonal=True, d=1, D=1, trace=True, error_action='ignore', # don't want to know if an order does not work suppress_warnings=True, # don't want convergence warnings stepwise=True) # set to stepwise return stepwise_fit.summary()" ); } [Test, Explicit("Installed in specific environment. Requires older gym")] public void StableBaselinesTest() { PythonInitializer.ActivatePythonVirtualEnvironment("/Foundation-Tensorforce"); AssertCode( @" from stable_baselines3 import PPO from stable_baselines3.common.env_util import make_vec_env def RunTest(): env = make_vec_env(""CartPole-v1"", n_envs=1) model = PPO(""MlpPolicy"", env, verbose=1) model.learn(total_timesteps=500)"); } [Test] public void GensimTest() { AssertCode( @" from gensim import models def RunTest(): # https://radimrehurek.com/gensim/tutorial.html corpus = [[(0, 1.0), (1, 1.0), (2, 1.0)], [(2, 1.0), (3, 1.0), (4, 1.0), (5, 1.0), (6, 1.0), (8, 1.0)], [(1, 1.0), (3, 1.0), (4, 1.0), (7, 1.0)], [(0, 1.0), (4, 2.0), (7, 1.0)], [(3, 1.0), (5, 1.0), (6, 1.0)], [(9, 1.0)], [(9, 1.0), (10, 1.0)], [(9, 1.0), (10, 1.0), (11, 1.0)], [(8, 1.0), (10, 1.0), (11, 1.0)]] tfidf = models.TfidfModel(corpus) vec = [(0, 1), (4, 1)] return f'{tfidf[vec]}'" ); } [Test] public void ScikitMultiflowTest() { AssertCode( @" from skmultiflow.data import WaveformGenerator from skmultiflow.trees import HoeffdingTree from skmultiflow.evaluation import EvaluatePrequential def RunTest(): # 1. Create a stream stream = WaveformGenerator() stream.prepare_for_use() # 2. Instantiate the HoeffdingTree classifier ht = HoeffdingTree() # 3. Setup the evaluator evaluator = EvaluatePrequential(show_plot=False, pretrain_size=200, max_samples=20000) # 4. Run evaluation evaluator.evaluate(stream=stream, model=ht) return 'Test passed, module exists'" ); } [Test] public void ScikitOptimizeTest() { AssertCode( @" import numpy as np from skopt import gp_minimize def f(x): return (np.sin(5 * x[0]) * (1 - np.tanh(x[0] ** 2)) * np.random.randn() * 0.1) def RunTest(): res = gp_minimize(f, [(-2.0, 2.0)]) return f'Test passed: {res}'" ); } [Test] public void CremeTest() { AssertCode( @" from creme import datasets def RunTest(): X_y = datasets.Bikes() x, y = next(iter(X_y)) return f'Number of bikes: {y}'" ); } [Test] public void NltkTest() { AssertCode( @" import nltk.data def RunTest(): text = ''' Punkt knows that the periods in Mr. Smith and Johann S. Bach do not mark sentence boundaries. And sometimes sentences can start with non-capitalized words. i is a good variable name. ''' sent_detector = nltk.data.load('tokenizers/punkt/english.pickle') return '\n-----\n'.join(sent_detector.tokenize(text.strip()))" ); } [Test] public void NltkVaderTest() { AssertCode( @" from nltk.sentiment.vader import SentimentIntensityAnalyzer from nltk import tokenize def RunTest(): sentences = [ 'VADER is smart, handsome, and funny.', # positive sentence example... 'VADER is smart, handsome, and funny!', # punctuation emphasis handled correctly (sentiment intensity adjusted) 'VADER is very smart, handsome, and funny.', # booster words handled correctly (sentiment intensity adjusted) 'VADER is VERY SMART, handsome, and FUNNY.', # emphasis for ALLCAPS handled 'VADER is VERY SMART, handsome, and FUNNY!!!',# combination of signals - VADER appropriately adjusts intensity 'VADER is VERY SMART, really handsome, and INCREDIBLY FUNNY!!!',# booster words & punctuation make this close to ceiling for score 'The book was good.', # positive sentence 'The book was kind of good.', # qualified positive sentence is handled correctly (intensity adjusted) 'The plot was good, but the characters are uncompelling and the dialog is not great.', # mixed negation sentence 'A really bad, horrible book.', # negative sentence with booster words 'At least it is not a horrible book.', # negated negative sentence with contraction ':) and :D', # emoticons handled '', # an empty string is correctly handled 'Today sux', # negative slang handled 'Today sux!', # negative slang with punctuation emphasis handled 'Today SUX!', # negative slang with capitalization emphasis 'Today kinda sux! But I will get by, lol' # mixed sentiment example with slang and constrastive conjunction 'but' ] paragraph = 'It was one of the worst movies I have seen, despite good reviews. \ Unbelievably bad acting!! Poor direction.VERY poor production. \ The movie was bad.Very bad movie.VERY bad movie.VERY BAD movie.VERY BAD movie!' lines_list = tokenize.sent_tokenize(paragraph) sentences.extend(lines_list) sid = SentimentIntensityAnalyzer() for sentence in sentences: ss = sid.polarity_scores(sentence) return f'{sid}'" ); } [Test, Explicit("Requires mlfinlab installed")] public void MlfinlabTest() { AssertCode( @" from mlfinlab.portfolio_optimization.hrp import HierarchicalRiskParity from mlfinlab.portfolio_optimization.mean_variance import MeanVarianceOptimisation import numpy as np import pandas as pd import os def RunTest(): # Read in data data_file = os.getcwd() + '/TestData/stock_prices.csv' stock_prices = pd.read_csv(data_file, parse_dates=True, index_col='Date') # The date column may be named differently for your input. # Compute HRP weights hrp = HierarchicalRiskParity() hrp.allocate(asset_prices=stock_prices, resample_by='B') hrp_weights = hrp.weights.sort_values(by=0, ascending=False, axis=1) # Compute IVP weights mvo = MeanVarianceOptimisation() mvo.allocate(asset_prices=stock_prices, solution='inverse_variance', resample_by='B') ivp_weights = mvo.weights.sort_values(by=0, ascending=False, axis=1) return f'HRP: {hrp_weights} IVP: {ivp_weights}'" ); } [Test] public void JaxTest() { AssertCode( @" from jax import * import jax.numpy as jnp def predict(params, inputs): for W, b in params: outputs = jnp.dot(inputs, W) + b inputs = jnp.tanh(outputs) return outputs def logprob_fun(params, inputs, targets): preds = predict(params, inputs) return jnp.sum((preds - targets)**2) def RunTest(): grad_fun = jit(grad(logprob_fun)) # compiled gradient evaluation function return jit(vmap(grad_fun, in_axes=(None, 0, 0))) # fast per-example grads" ); } [Test, Explicit("Has issues when run along side the other tests. random.PRNGKey call hangs")] public void NeuralTangentsTest() { AssertCode( @" from jax import * import neural_tangents as nt from neural_tangents import * def RunTest(): key = random.PRNGKey(1) key1, key2 = random.split(key, 2) x_train = random.normal(key1, (20, 32, 32, 3)) y_train = random.uniform(key1, (20, 10)) x_test = random.normal(key2, (5, 32, 32, 3)) init_fn, apply_fn, kernel_fn = stax.serial( stax.Conv(128, (3, 3)), stax.Relu(), stax.Conv(256, (3, 3)), stax.Relu(), stax.Conv(512, (3, 3)), stax.Flatten(), stax.Dense(10) ) predict_fn = nt.predict.gradient_descent_mse_ensemble(kernel_fn, x_train, y_train) # (5, 10) np.ndarray NNGP test prediction predict_fn(x_test=x_test, get='nngp')" ); } [Test] public void SmmTest() { AssertCode( @" import ssm def RunTest(): T = 100 # number of time bins K = 5 # number of discrete states D = 2 # dimension of the observations # make an hmm and sample from it hmm = ssm.HMM(K, D, observations='gaussian') z, y = hmm.sample(T) test_hmm = ssm.HMM(K, D, observations='gaussian') test_hmm.fit(y) return test_hmm.most_likely_states(y)" ); } [Test] public void RiskparityportfolioTest() { AssertCode( @" import riskparityportfolio as rp import numpy as np def RunTest(): Sigma = np.vstack((np.array((1.0000, 0.0015, -0.0119)), np.array((0.0015, 1.0000, -0.0308)), np.array((-0.0119, -0.0308, 1.0000)))) b = np.array((0.1594, 0.0126, 0.8280)) w = rp.vanilla.design(Sigma, b) rc = w @ (Sigma * w) return rc/np.sum(rc)" ); } [Test] public void PyrbTest() { AssertCode( @" import pandas as pd import numpy as np from pyrb import ConstrainedRiskBudgeting def RunTest(): vol = [0.05,0.05,0.07,0.1,0.15,0.15,0.15,0.18] cor = np.array([[100, 80, 60, -20, -10, -20, -20, -20], [ 80, 100, 40, -20, -20, -10, -20, -20], [ 60, 40, 100, 50, 30, 20, 20, 30], [-20, -20, 50, 100, 60, 60, 50, 60], [-10, -20, 30, 60, 100, 90, 70, 70], [-20, -10, 20, 60, 90, 100, 60, 70], [-20, -20, 20, 50, 70, 60, 100, 70], [-20, -20, 30, 60, 70, 70, 70, 100]])/100 cov = np.outer(vol,vol)*cor C = None d = None CRB = ConstrainedRiskBudgeting(cov,C=C,d=d) CRB.solve() return CRB" ); } [Test] public void CopulaeTest() { AssertCode( @" from copulae import NormalCopula import numpy as np def RunTest(): np.random.seed(8) data = np.random.normal(size=(300, 8)) cop = NormalCopula(8) cop.fit(data) cop.random(10) # simulate random number # getting parameters p = cop.params # cop.params = ... # you can override parameters too, even after it's fitted! # get a summary of the copula. If it's fitted, fit details will be present too return cop.summary()" ); } [Test] public void SanityClrInstallation() { AssertCode( @" from os import walk import setuptools as _ def RunTest(): try: import clr clr.AddReference() print('No clr errors') #Checks complete except: #isolate error cause try: import clr print('clr exists') #Module exists try: f = [] for (dirpath, dirnames, filenames) in walk(print(clr.__path__)): f.extend(filenames) break return(f.values['style_builder.py']) #If this is reached, likely due to an issue with this file itself except: print('no style_builder') #pythonnet install error, most likely except: print('clr does not exist') #Only remaining cause" ); } [Test] public void Tigramite() { AssertCode(@" import numpy as np from tigramite.pcmci import PCMCI from tigramite.independence_tests import ParCorr import tigramite.data_processing as pp from tigramite.toymodels import structural_causal_processes as toys def RunTest(): # Example process to play around with # Each key refers to a variable and the incoming links are supplied # as a list of format [((var, -lag), coeff, function), ...] def lin_f(x): return x links = {0: [((0, -1), 0.9, lin_f)], 1: [((1, -1), 0.8, lin_f), ((0, -1), 0.8, lin_f)], 2: [((2, -1), 0.7, lin_f), ((1, 0), 0.6, lin_f)], 3: [((3, -1), 0.7, lin_f), ((2, 0), -0.5, lin_f)], } data, nonstat = toys.structural_causal_process(links, T=1000, seed=7) # Data must be array of shape (time, variables) print (data.shape) (1000, 4) dataframe = pp.DataFrame(data) cond_ind_test = ParCorr() pcmci = PCMCI(dataframe=dataframe, cond_ind_test=cond_ind_test) results = pcmci.run_pcmciplus(tau_min=0, tau_max=2, pc_alpha=0.01) pcmci.print_results(results, alpha_level=0.01) "); } [Test, Explicit("Sometimes crashes when run along side the other tests")] public void NBeatsTest() { AssertCode(@" import warnings import numpy as np from nbeats_keras.model import NBeatsNet as NBeatsKeras from nbeats_pytorch.model import NBeatsNet as NBeatsPytorch warnings.filterwarnings(action='ignore', message='Setting attributes') def RunTest(): # https://keras.io/layers/recurrent/ # At the moment only Keras supports input_dim > 1. In the original paper, input_dim=1. num_samples, time_steps, input_dim, output_dim = 50_000, 10, 1, 1 # This example is for both Keras and Pytorch. In practice, choose the one you prefer. for BackendType in [NBeatsKeras, NBeatsPytorch]: # NOTE: If you choose the Keras backend with input_dim>1, you have # to set the value here too (in the constructor). backend = BackendType( backcast_length=time_steps, forecast_length=output_dim, stack_types=(NBeatsKeras.GENERIC_BLOCK, NBeatsKeras.GENERIC_BLOCK), nb_blocks_per_stack=2, thetas_dim=(4, 4), share_weights_in_stack=True, hidden_layer_units=64 ) # Definition of the objective function and the optimizer. backend.compile(loss='mae', optimizer='adam') # Definition of the data. The problem to solve is to find f such as | f(x) - y | -> 0. # where f = np.mean. x = np.random.uniform(size=(num_samples, time_steps, input_dim)) y = np.mean(x, axis=1, keepdims=True) # Split data into training and testing datasets. c = num_samples // 10 x_train, y_train, x_test, y_test = x[c:], y[c:], x[:c], y[:c] test_size = len(x_test) # Train the model. print('Training...') backend.fit(x_train, y_train, validation_data=(x_test, y_test), epochs=5, batch_size=128) # Save the model for later. backend.save('n_beats_model.h5') # Predict on the testing set (forecast). predictions_forecast = backend.predict(x_test) np.testing.assert_equal(predictions_forecast.shape, (test_size, backend.forecast_length, output_dim)) # Predict on the testing set (backcast). predictions_backcast = backend.predict(x_test, return_backcast=True) np.testing.assert_equal(predictions_backcast.shape, (test_size, backend.backcast_length, output_dim)) # Load the model. model_2 = BackendType.load('n_beats_model.h5') np.testing.assert_almost_equal(predictions_forecast, model_2.predict(x_test)) "); } [Test, Explicit("Sometimes hangs when run along side the other tests")] public void AxPlatformTest() { AssertCode(@" from ax import optimize def RunTest(): best_parameters, best_values, experiment, model = optimize( parameters=[ { ""name"": ""x1"", ""type"": ""range"", ""bounds"": [-10.0, 10.0], }, { ""name"": ""x2"", ""type"": ""range"", ""bounds"": [-10.0, 10.0], }, ], # Booth function evaluation_function=lambda p: (p[""x1""] + 2*p[""x2""] - 7)**2 + (2*p[""x1""] + p[""x2""] - 5)**2, minimize=True, ) "); } [Test] public void RiskfolioLibTest() { AssertCode(@" import riskfolio as rp import pandas as pd def RunTest(): # Data date_index = pd.DatetimeIndex(data=['2020-06-15', '2020-06-15', '2020-06-15']) d = {'AAPL': [10, 22, 11], 'AMC': [21, 13, 45]} df = pd.DataFrame(data=d).set_index(date_index) df = df.pct_change().dropna() # Building the portfolio object port = rp.Portfolio(returns=df) method_mu='hist' # Method to estimate expected returns based on historical data. method_cov='hist' # Method to estimate covariance matrix based on historical data. port.assets_stats(method_mu=method_mu, method_cov=method_cov, d=0.94) # Estimate optimal portfolio: model='Classic' # Could be Classic (historical), BL (Black Litterman) or FM (Factor Model) rm = 'MV' # Risk measure used, this time will be variance obj = 'Sharpe' # Objective function, could be MinRisk, MaxRet, Utility or Sharpe hist = True # Use historical scenarios for risk measures that depend on scenarios rf = 0 # Risk free rate l = 0 # Risk aversion factor, only useful when obj is 'Utility' w = port.optimization(model=model, rm=rm, obj=obj, rf=rf, l=l, hist=hist) w.T"); } /// /// Simple test for modules that don't have short test example /// /// The module we are testing /// The module version [TestCase("pulp", "2.6.0", "VERSION")] [TestCase("pymc", "4.1.4", "__version__")] [TestCase("pypfopt", "pypfopt", "__name__")] [TestCase("wrapt", "1.14.1", "__version__")] [TestCase("tslearn", "0.5.2", "__version__")] [TestCase("tweepy", "4.10.0", "__version__")] [TestCase("pywt", "1.3.0", "__version__")] [TestCase("umap", "0.5.3", "__version__")] [TestCase("dtw", "1.2.2", "__version__")] [TestCase("mplfinance", "0.12.9b1", "__version__")] [TestCase("cufflinks", "0.17.3", "__version__")] [TestCase("ipywidgets", "8.0.0rc1", "__version__")] [TestCase("astropy", "5.1", "__version__")] [TestCase("gluonts", "0.7.7", "__version__")] [TestCase("gplearn", "0.4.2", "__version__")] [TestCase("h2o", "3.36.1.4", "__version__")] [TestCase("featuretools", "0.18.1", "__version__")] [TestCase("pennylane", "0.25.1", "version()")] [TestCase("pyfolio", "0.9.2", "__version__")] [TestCase("altair", "4.2.0", "__version__")] [TestCase("stellargraph", "1.2.1", "__version__")] [TestCase("modin", "0.15.3", "__version__")] [TestCase("persim", "0.3.1", "__version__")] [TestCase("pydmd", "0.4.0.post2209", "__version__")] [TestCase("pandas_ta", "0.3.14b0", "__version__")] [TestCase("finrl", "finrl", "__package__")] [TestCase("tensortrade", "1.0.3", "__version__")] [TestCase("quantstats", "0.0.59", "__version__")] [TestCase("autokeras", "1.0.20", "__version__")] [TestCase("panel", "0.14.0", "__version__")] [TestCase("pyheat", "pyheat", "__name__")] [TestCase("tensorflow_decision_forests", "1.0.1", "__version__")] public void ModuleVersionTest(string module, string value, string attribute) { AssertCode( $@" import {module} def RunTest(): assert({module}.{attribute} == '{value}') return 'Test passed, module exists'" ); } private static void AssertCode(string code) { using (Py.GIL()) { using dynamic module = PyModule.FromString(Guid.NewGuid().ToString(), code); Assert.DoesNotThrow(() => { var response = module.RunTest(); if(response != null) { response.Dispose(); } }); } } } }