* Refactor and hotfix run script
Removed dependency on `realpath`, notably absent from macOS and some debian distros. Replaced with an equivalent bash function.
Cleaned up prompt response handling, replaced var tests with param expressions.
Removed potentially uneeded calls to sudo (again absent on some systems and most users are part of the docker group anyway). Instead, test if it's needed and get preauth with sudo -v.
Poll for running and stopped Lean containers, and prompt before replacing them. Would fail prior.
Uppercased variabled. Sorry.
* Revert docker output redirection to stderr
* Adjustments to maintain all functionality
* Mimic behavior across run scripts
* Update readme to reflect Docker script changes
* Ignore results storage
* Correct print statement
* Mirror changes on research docker scripts
* Make executable
* Handle already running container and sudo privs
* Fix for issues found in testing
* Address Review
* Small adjustments found in linux testing
* Doc improvement
* Add auto update option for Docker images
* Fix image var reference
Co-authored-by: Peter Kazazes <peter@peterk.co>
* Add research docker launch script
* Internalize creation of cfg and dir to dockerfile
* Implement bash version of notebook run script
* quick fix to use docker.cfg
* update readme
* typo fix
* Review tweaks
* Tweaks