k-dense-ai--scientific-agent-skills

_contract

citation-management: fix BibTeX corruption and metadata defects

2026-07-31 10:59:00 -07:00

_meta

Update documentation and versioning for Agent Plugins compliance

2026-08-11 17:44:32 -07:00

analytical-method-validation

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

arbor

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

arboreto

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

autoskill

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

bids

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

bioservices

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

bulk-rnaseq

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

citation-management

citation-management: fix BibTeX corruption and metadata defects

2026-07-31 10:59:00 -07:00

clinical-decision-support

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

clinical-reports

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

deepchem

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

deeptools

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

diffdock

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

dnanexus-integration

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

docx

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

etetoolkit

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

exa-search

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

experimental-design

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

exploratory-data-analysis

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

flowio

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

fluidsim

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

generate-image

Update image generation and citation management scripts to use 'uv pip install' for package installations. Modify skill versions for infographics and generate-image to reflect recent changes. Enhance error handling and review logic in infographic generation scripts, ensuring better feedback on quality assessments.

2026-07-31 10:26:56 -07:00

geniml

Update documentation and improve test structure for autoskill

2026-07-26 09:54:14 -07:00

genomic-coordinates

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

geopandas

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

get-available-resources

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

gget

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

gtars

Update documentation and improve test structure for autoskill

2026-07-26 09:54:14 -07:00

hugging-science

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

hypogenic

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

hypothesis-generation

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

imaging-data-commons

Update imaging-data-commons skill from v1.4.0 to upstream v1.8.1

2026-08-10 17:06:22 -04:00

infographics

Update image generation and citation management scripts to use 'uv pip install' for package installations. Modify skill versions for infographics and generate-image to reflect recent changes. Enhance error handling and review logic in infographic generation scripts, ensuring better feedback on quality assessments.

2026-07-31 10:26:56 -07:00

iso-standards-readiness

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

lab-hardware-cad

Add CAD skill for lab hardware

2026-08-14 12:20:47 -07:00

labarchive-integration

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

latchbio-integration

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

latex-posters

Update image generation and citation management scripts to use 'uv pip install' for package installations. Modify skill versions for infographics and generate-image to reflect recent changes. Enhance error handling and review logic in infographic generation scripts, ensuring better feedback on quality assessments.

2026-07-31 10:26:56 -07:00

liteparse

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

literature-review

Update image generation and citation management scripts to use 'uv pip install' for package installations. Modify skill versions for infographics and generate-image to reflect recent changes. Enhance error handling and review logic in infographic generation scripts, ensuring better feedback on quality assessments.

2026-07-31 10:26:56 -07:00

market-research-reports

market-research-reports: fix ledger validator crash on publication_date=not-stated

2026-07-31 10:57:18 -07:00

markitdown

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

matchms

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

matlab

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

matplotlib

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

medchem

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

ncats-arax

Add bounded NCATS ARAX knowledge graph skill

2026-08-08 02:44:06 -04:00

neurokit2

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

neuropixels-analysis

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

omero-integration

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

onekgpd

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

ontology-term-resolution

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

open-notebook

Update documentation and improve test structure for autoskill

2026-07-26 09:54:14 -07:00

openpiv

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

opentrons-integration

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

pacsomatic

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

paper-lookup

Update paper-lookup to 2.0

2026-07-27 18:32:30 -07:00

pathml

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

pathogen-variant-surveillance

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

pathway-enrichment

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

pdf

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

peer-review

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

phylogenetics

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

pkpd-modeling

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

pptx

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

pptx-posters

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

primekg

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

protocolsio-integration

Update documentation and improve test structure for autoskill

2026-07-26 09:54:14 -07:00

pufferlib

Update documentation and improve test structure for autoskill

2026-07-26 09:54:14 -07:00

pydeseq2

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

pydicom

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

pylabrobot

Update documentation and improve test structure for autoskill

2026-07-26 09:54:14 -07:00

pymatgen

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

pymc

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

pymoo

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

pyopenms

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

pysam

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

pytdc

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

pytorch-lightning

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

qiskit

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

qutip

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

rdkit

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

relsa-severity-assessment

Introduced a new skill for relsa-severity-assessment

2026-08-07 12:08:05 -07:00

research-lookup

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

scanpy

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

scholar-evaluation

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

scientific-brainstorming

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

scientific-schematics

Update image generation and citation management scripts to use 'uv pip install' for package installations. Modify skill versions for infographics and generate-image to reflect recent changes. Enhance error handling and review logic in infographic generation scripts, ensuring better feedback on quality assessments.

2026-07-31 10:26:56 -07:00

scientific-slides

Update image generation and citation management scripts to use 'uv pip install' for package installations. Modify skill versions for infographics and generate-image to reflect recent changes. Enhance error handling and review logic in infographic generation scripts, ensuring better feedback on quality assessments.

2026-07-31 10:26:56 -07:00

scientific-visualization

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

scientific-writing

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

scikit-learn

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

scikit-survival

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

scvelo

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

shap

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

simpy

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

stable-baselines3

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

statistical-analysis

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

statistical-power

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

timesfm-forecasting

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

treatment-plans

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

uncertainty-and-units

Add uncertainty-and-units skill under skills/uncertainty-and-units

2026-07-26 15:08:29 -07:00

venue-templates

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

waypoint-bio

Add waypoint skill

2026-08-17 16:40:28 -07:00

xlsx

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

conftest.py

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

run_all.py

Test every script-bearing skill, and enforce that it stays that way

2026-07-28 10:20:12 -07:00

skill-requirements.toml

Add waypoint skill

2026-08-17 16:40:28 -07:00