v0.16.5
304 Commits
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a5c3ba4acf |
fix(init): stop specify init hanging on arrow-key pickers in agent harnesses (#4178)
* fix(init): stop specify init hanging on arrow-key pickers in agent harnesses Agent harnesses often allocate a PTY so isatty is true, but they cannot send arrow keys. Fail fast when stdin is not a TTY, and add --non-interactive so scripted init applies defaults instead of hanging. Fixes #4152. * test(init): assert --non-interactive never prompts for URL extension trust Cover the HTTPS --extension confirmation path when stdin is a TTY: deny without --trust-extension-urls, and install with it, both without calling typer.confirm. |
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1334440978 |
[extension] Add DUBSAR Memory extension to community catalog (#4170)
* Add DUBSAR Memory extension to community catalog Add dubsar extension submitted by @kotnisofiane-bit to: - extensions/catalog.community.json (alphabetical order) - docs/community/extensions.md community extensions table Closes #4130 Assisted-by: GitHub Copilot (model: claude-sonnet-4.6, autonomous) Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * Address review: minimize catalog churn and add dubsar sha256 Reserialize the community catalog back to its original formatting and entry order so the patch is limited to the top-level timestamp plus the new dubsar entry, and add the published asset's sha256 digest so catalog installs enforce archive verification. Assisted-by: GitHub Copilot (model: Claude Opus 4.8, autonomous) Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com> --------- Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> Co-authored-by: Manfred Riem <15701806+mnriem@users.noreply.github.com> |
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3a404ae886 |
Update Keel Discovery extension to v0.2.0 (#4172)
Update keel extension submitted by @athulrajeev: - extensions/catalog.community.json (version, download_url, description, provides.commands) - docs/community/extensions.md community extensions table Closes #4154 Assisted-by: GitHub Copilot (model: claude-sonnet-4.6, autonomous) Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> |
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fa3a5c5ce7 |
Clarify extension catalog trust model in docs, help, and messaging (#4177)
* Clarify extension catalog trust model in docs, help, and messaging (#4176) Extension catalog management gave no explanation of why the community catalog is discovery-only, and the install-error text nudged users to flip a discovery catalog to install_allowed — exactly the wrong move. - Docs: add a "discovery-only vs. install sources" trust-model section, document `add --from <url>` as the lightweight vetted-install path, and stop implying you should make community installable. - Help: expand the `catalog` app and `--install-allowed` help to state the vetting intent instead of bare mechanics. - Messaging: rewrite the not-installable errors in `add`, `search`, and `info` to point at `--from` and self-curated catalogs, and to say explicitly not to flip a discovery-only catalog to install_allowed. - `catalog list` now prints trust-model guidance when a discovery-only catalog is active. - Tests cover the new list guidance (present/absent). Deliberately does not add a verb to toggle install_allowed on an existing catalog: discovery-only is a security boundary, not an inconvenience. Assisted-by: GitHub Copilot (model: Claude Opus 4.8, supervised) Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com> Copilot-Session: a86c498e-f129-4422-9983-d1a33513fd4d * Address PR review: copy-pasteable install hint and accurate --from warning (#4176) - The discovery-only "install directly" hint used the user-typed argument, which can be a display name with spaces (resolved via search) and would break when copied as a shell command. Emit the resolved catalog ID (ext_info['id']) instead. Added a regression test. - The `--from` untrusted-source warning claimed the URL was "not listed in any of your configured extension catalogs", which is false for a URL copied from a discovery-only catalog — the exact flow this PR documents. Reword it to state the install is bypassing trusted (install-allowed) catalogs, which is accurate regardless of discovery-catalog membership. Assisted-by: GitHub Copilot (model: Claude Opus 4.8, supervised) Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com> Copilot-Session: a86c498e-f129-4422-9983-d1a33513fd4d * Harden install hints against catalog-controlled IDs; expose archive URL (#4176) Second review round on #4177. Shell-safety: catalog entry IDs (especially from discovery-only catalogs) are not validated during catalog merge, and rich.markup.escape only neutralizes Rich markup, not shell metacharacters. A malicious ID like `foo; rm -rf ~` was interpolated into the `specify extension add ... --from` command we encourage the user to copy. Add `_command_safe_id`, which only emits an ID matching the manifest rule `^[a-z0-9-]+$` (via VALID_EXTENSION_ARTIFACT_NAME_PATTERN) and otherwise falls back to a literal `<extension-id>` placeholder. Applied to every suggested command in `add`, `search`, and `info`. Discoverability: the documented `--from <archive-url>` flow gave no CLI path to obtain the URL. `extension info` now prints the candidate `download_url` for a discovery-only entry (clearly flagged as needing vetting), and the docs show `extension info <name>` as the way to get the archive URL. Tests cover the resolved-ID hint, the unsafe-ID neutralization, and pass the full extensions + CLI suites (635). Assisted-by: GitHub Copilot (model: Claude Opus 4.8, supervised) Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com> Copilot-Session: a86c498e-f129-4422-9983-d1a33513fd4d * Reject leading-hyphen catalog IDs; test info archive-URL branch (#4176) Third review round on #4177. _command_safe_id: an ID like `--force` satisfies the manifest character rule `^[a-z0-9-]+$` but Typer parses a leading hyphen as an option rather than the positional extension argument, so an untrusted catalog could still yield a non-copyable or option-altering suggested command. Reject a leading hyphen and fall back to the `<extension-id>` placeholder. Tests: cover the new `extension info` discovery-only branch that surfaces the candidate `download_url` (plus the no-URL fallback), and the leading-hyphen rejection. Full extensions suite green (528). Assisted-by: GitHub Copilot (model: Claude Opus 4.8, supervised) Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com> Copilot-Session: a86c498e-f129-4422-9983-d1a33513fd4d --------- Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com> Copilot-Session: a86c498e-f129-4422-9983-d1a33513fd4d |
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e4895d103e |
Add pay-x402 community extension with correct catalog-addition timestamps (#4175)
* Initial plan * Add pay-x402 community extension with catalog-addition date timestamps Assisted-by: GitHub Copilot (model: unknown, autonomous) Co-authored-by: mnriem <15701806+mnriem@users.noreply.github.com> --------- Co-authored-by: copilot-swe-agent[bot] <198982749+Copilot@users.noreply.github.com> Co-authored-by: mnriem <15701806+mnriem@users.noreply.github.com> |
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3ede49f31b |
Add ASCII Diagram Renderer extension to community catalog (#4173)
Add ascii-diagram extension submitted by @MRZHUH to: - extensions/catalog.community.json (alphabetical order) - docs/community/extensions.md community extensions table Closes #4161 Assisted-by: GitHub Copilot (model: claude-sonnet-4.6, autonomous) Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> |
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7d04d70c76 |
Update Intake Review Governance preset to v0.2.1 (#4169)
Update intake-review-governance preset submitted by @hindermath to: - presets/catalog.community.json (version, download_url, documentation, provides) - docs/community/presets.md community presets table Closes #4127 Assisted-by: GitHub Copilot (model: claude-sonnet-4.6, autonomous) Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> |
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bf88c9f9a8 |
Add SpecAssay bundle to community catalog (#4125)
Adds specassay v0.3.4 to bundles/catalog.community.json and docs/community/bundles.md. Validation results: - Bundle ID matches ^[a-z0-9](?:[a-z0-9._-]*[a-z0-9])?$: pass - Version 0.3.4 is valid semver X.Y.Z: pass - Repository https://github.com/rdryfoos/specassay is a public GitHub repo containing bundle.yml, README.md, and LICENSE: pass - bundle.yml fields match submission (id, name, version, role, author, license, speckit_version, provides 1 extension + 1 preset): pass - README documents role, components, required catalogs, and install steps: pass - Download URL is a valid HTTPS GitHub release asset under the submitted repo: pass - Release v0.3.4 exists and specassay-0.3.4.zip is attached: pass - Catalog entry fields match submission and manifest; verified=false: pass - Tags are 2-5 lowercase strings: pass (5 tags) - Required catalogs documented (extensions + presets); README includes catalog add commands and testing details confirm catalog registration: pass - All checklist items checked: pass Closes #4059 cc @rdryfoos Assisted-by: GitHub Copilot (model: claude-sonnet-4.6, autonomous) Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> |
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71470cb551 |
Add SpecAssay preset to community catalog (#4123)
Add specassay preset submitted by @rdryfoos to: - presets/catalog.community.json (alphabetical order) - docs/community/presets.md community presets table Closes #4058 Assisted-by: GitHub Copilot (model: claude-sonnet-4.6, autonomous) Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> |
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7e0db461ec |
Update Intake Authoring Governance preset to v0.3.1 (#4121)
Update intake-authoring-governance preset submitted by @hindermath: - presets/catalog.community.json (version, download_url, documentation, description, templates count) - docs/community/presets.md community presets table Closes #4118 Assisted-by: GitHub Copilot (model: claude-sonnet-4.6, autonomous) Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> |
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7f4f576829 |
Add Architecture Governance extension to community catalog (#4122)
Add arch-governance extension submitted by @ashbrener to: - extensions/catalog.community.json (alphabetical order) - docs/community/extensions.md community extensions table Closes #4084 Assisted-by: GitHub Copilot (model: claude-sonnet-4.6, autonomous) Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> |
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83883a2eba |
Add SpecAssay Check extension to community catalog (#4113)
Add specassay-check extension submitted by @rdryfoos to: - extensions/catalog.community.json (alphabetical order) - docs/community/extensions.md community extensions table Closes #4057 Assisted-by: GitHub Copilot (model: claude-sonnet-4.6, autonomous) Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> |
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7346819039 |
Update Agent Parity Governance preset to v0.4.2 (#4110)
Update agent-parity-governance preset submitted by @hindermath to: - presets/catalog.community.json (version, download_url, documentation, description, templates count) - docs/community/presets.md community presets table Closes #4109 Assisted-by: GitHub Copilot (model: claude-sonnet-4.6, autonomous) Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> |
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5a052d36d1 |
[extension] Add SpecJudge extension to community catalog (#4079)
* Add SpecJudge extension to community catalog Add specjudge extension submitted by @JoaquinRuiz to: - extensions/catalog.community.json (alphabetical order) - docs/community/extensions.md community extensions table Closes #4068 Assisted-by: GitHub Copilot (model: claude-sonnet-4.6, autonomous) Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * Revert unrelated formatting-only edits in community catalog Restore the compact single-line `tools` array formatting for existing extensions that were incidentally expanded, keeping the diff scoped to the SpecJudge addition and the catalog `updated_at` bump. Assisted-by: GitHub Copilot (model: Claude Opus 4.8, autonomous) Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com> --------- Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> Co-authored-by: Manfred Riem <15701806+mnriem@users.noreply.github.com> |
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13c3c942fc |
[extension] Add spec-kit-atlas extension to community catalog (#4105)
* Add spec-kit-atlas extension to community catalog Add atlas extension submitted by @ashbrener to: - extensions/catalog.community.json (alphabetical order) - docs/community/extensions.md community extensions table Closes #3993 Assisted-by: GitHub Copilot (model: claude-sonnet-4.6, autonomous) Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * Potential fix for pull request finding Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com> --------- Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> Co-authored-by: Manfred Riem <15701806+mnriem@users.noreply.github.com> Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com> |
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229022943c |
feat(presets): list presets in resolution/precedence order (#4086) (#4104)
`specify preset list` now sorts installed presets by (priority, id) so the printed order matches the actual resolution/composition order used by PresetRegistry.list_by_priority(). Lower priority number = higher precedence; ties are broken alphabetically by preset id. Adds a header and footer note clarifying the ordering, updates the presets reference docs, and adds tests. Assisted-by: GitHub Copilot (model: Claude Opus 4.8, autonomous) Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com> |
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750ce47cb8 |
Update Cross-Platform Governance preset to v0.2.2 (#4080)
Update cross-platform-governance preset submitted by @hindermath to: - presets/catalog.community.json (version, download_url, documentation, description, provides, tags, updated_at) - docs/community/presets.md community presets table Closes #4078 Assisted-by: GitHub Copilot (model: claude-sonnet-4.6, autonomous) Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> |
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996b24c561 |
Update A11Y Governance preset to v0.4.3 (#4074)
Update a11y-governance preset submitted by @hindermath to: - presets/catalog.community.json (version, download_url, documentation, description, templates count, tags) - docs/community/presets.md community presets table Closes #4064 Assisted-by: GitHub Copilot (model: claude-sonnet-4.6, autonomous) Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> |
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7dd706880e |
Update iSAQB Architecture Governance preset to v0.2.2 (#4056)
Update isaqb-architecture-governance preset submitted by @hindermath: - presets/catalog.community.json (version, download_url, documentation, description, templates count, tags, updated_at) - docs/community/presets.md community presets table Closes #4055 Assisted-by: GitHub Copilot (model: claude-sonnet-4.6, autonomous) Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> |
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85d3ed289d |
Add SpecKit Grill Me extension to community catalog (#4052)
Add grill extension submitted by @yoshi1220 to: - extensions/catalog.community.json (alphabetical order) - docs/community/extensions.md community extensions table Closes #4047 Assisted-by: GitHub Copilot (model: claude-sonnet-4.6, autonomous) Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> |
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5ec937e07a |
Update Architecture Governance preset to v0.5.2 (#4050)
Update architecture-governance preset submitted by @hindermath to: - presets/catalog.community.json (version, download_url, documentation, description, provides, tags, updated_at) - docs/community/presets.md community presets table Closes #4042 Assisted-by: GitHub Copilot (model: claude-sonnet-4.6, autonomous) Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> |
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fb427e47ef |
docs: clarify example spec guidance (#4048)
Co-authored-by: root <kinsonnee@gmail.com> |
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bd04776dcc |
Clarify custom checklist ownership and lifecycle (#4028)
* docs: clarify custom checklist lifecycle * docs: clarify implement checklist marker ownership --------- Co-authored-by: root <kinsonnee@gmail.com> |
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c5258e680b |
Update Archive Extension to v1.2.2 (#4053)
Update archive extension submitted by @stn1slv: - extensions/catalog.community.json (version, download_url, updated_at) - docs/community/extensions.md community extensions table Closes #4049 Assisted-by: GitHub Copilot (model: claude-sonnet-4.6, autonomous) Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> |
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9d15554c08 |
Update Security Governance preset to v0.6.2 (#4040)
Update security-governance preset submitted by @hindermath to: - presets/catalog.community.json (version, download_url, description, documentation, provides, tags, updated_at) - docs/community/presets.md community presets table Closes #4039 Assisted-by: GitHub Copilot (model: claude-sonnet-4.6, autonomous) Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> |
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6aa9431b24 |
Add Command Code integration to spec-kit (#4019)
* Add Command Code integration to spec-kit Adds `command-code` as a built-in skills-based integration so Spec Kit can be installed into Command Code. Command Code loads agent skills from `.commandcode/skills/speckit-<name>/SKILL.md` and invokes them in chat as `$speckit-<command>`. - New `CommandCodeIntegration` (SkillsIntegration) writing to `.commandcode/skills/`; declared multi-install safe (static, isolated agent root). - Register in `_register_builtins()` and the integration catalog. - Add `command-code` to `DOLLAR_SKILLS_AGENTS` so next-steps guidance renders `$speckit-*` invocations. - Tests: reuse `SkillsIntegrationTests` mixin plus a dollar-invocation next-steps test; registry completeness updated. - Docs: README and docs/reference/integrations.md (supported agents + multi-install-safe table). Co-authored-by: CommandCodeBot <noreply@commandcode.ai> Assisted-by: Command Code (autonomous) * Fix issue template agent lists to include command-code The runtime AGENT_CONFIG now includes command-code, but the GitHub issue templates and the consistency test's expected key list were not updated, failing test_issue_template_agent_lists_match_runtime_integrations. Co-authored-by: CommandCodeBot <noreply@commandcode.ai> Assisted-by: Command Code (autonomous) --------- Co-authored-by: CommandCodeBot <noreply@commandcode.ai> |
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f0ee1fc419 |
Add Keel Discovery extension to community catalog (#4035)
Add keel extension submitted by @athulrajeev to: - extensions/catalog.community.json (alphabetical order) - docs/community/extensions.md community extensions table Closes #4026 Assisted-by: GitHub Copilot (model: claude-sonnet-4.6, autonomous) Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> |
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a2c7ff29db |
Add Model Routing Governance preset to community catalog (#4033)
Add model-routing-governance preset submitted by @hindermath to: - presets/catalog.community.json (alphabetical order) - docs/community/presets.md community presets table Closes #4021 Assisted-by: GitHub Copilot (model: claude-sonnet-4.6, autonomous) Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> |
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d751231468 |
docs: document installing specify-cli from a custom package index (#4032)
* docs: document installing specify-cli from a custom package index Add a generic section to the PyPI install guide covering how to point uv, pipx, and pip at a non-default package index (env var and flags), with a placeholder URL, plus notes on pins/upgrades and authentication. Link to it from the main installation guide. Assisted-by: GitHub Copilot (model: Claude Opus 4.8, autonomous) Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com> Copilot-Session: d6ef3f75-54e9-4789-902b-4f0adeaadfad * Potential fix for pull request finding Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com> --------- Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com> Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com> Copilot-Session: d6ef3f75-54e9-4789-902b-4f0adeaadfad |
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40037b1aca |
feat(init): scaffold managed .specify/.gitignore (#4000)
* feat(init): scaffold managed .specify/.gitignore Write a manifest-tracked `.specify/.gitignore` during shared-infra install so machine-local Spec Kit state stays out of version control while everything else under `.specify/` remains shareable: - `feature.json` — the current-feature pointer, rewritten on every feature switch (per-checkout state, not something to share). - `extensions/*/local-config.yml` — per-machine extension config overrides. The file is routed through the same overwrite/skip/preserve policy as shared templates: `--force` refreshes it, user edits are preserved on re-init, and uninstall removes it via the manifest. Addresses github/spec-kit#2304. Assisted-by: GitHub Copilot (model: Claude Opus 4.8, autonomous) Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com> Copilot-Session: 98faefd1-9fc8-48fc-bd25-d4f3ccbb2ab9 * docs: correct .specify/.gitignore uninstall claim The file is tracked in the shared-infra manifest (speckit.manifest.json), not the per-integration manifest that `specify integration uninstall` loads. Shared infrastructure is deliberately preserved on uninstall (see test_uninstall_preserves_shared_infra), so `.specify/.gitignore` is left in place rather than removed. Reword the code comment and core.md note to state the actual behavior; keep the true benefits (force-refresh and preserve-on-edit). Assisted-by: GitHub Copilot (model: Claude Opus 4.8, autonomous) Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com> Copilot-Session: 98faefd1-9fc8-48fc-bd25-d4f3ccbb2ab9 * revert: drop manual CHANGELOG.md edit CHANGELOG.md is auto-generated; do not hand-edit it. Assisted-by: GitHub Copilot (model: Claude Opus 4.8, autonomous) Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com> Copilot-Session: 98faefd1-9fc8-48fc-bd25-d4f3ccbb2ab9 * test: add .specify/.gitignore to integration file inventories The complete-file-inventory tests assert an exact match of every file produced by `specify init`. Now that shared infra scaffolds a managed `.specify/.gitignore`, add it to the expected inventories so the exact-match assertions pass on both sh and ps script types. Assisted-by: GitHub Copilot (model: Claude Opus 4.8, autonomous) --------- Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com> Copilot-Session: 98faefd1-9fc8-48fc-bd25-d4f3ccbb2ab9 |
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e57a86cc9c |
Add TDD Extension to community catalog (#3982)
Add tdd extension submitted by @d0whc3r to: - extensions/catalog.community.json (alphabetical order) - docs/community/extensions.md community extensions table Closes #3978 Assisted-by: GitHub Copilot (model: claude-sonnet-4.6, autonomous) Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> |
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0fbd99d594 |
feat(copilot): default integration to skills (#3976)
* feat(copilot): default integration to skills Make Copilot skills the default while retaining the commands layout behind --integration-options="--commands". Preserve historical project layouts and validate conflicting mode flags before switch teardown. Assisted-by: GitHub Copilot (model: GPT-5.6 Sol, autonomous) Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com> Copilot-Session: 930d846b-8921-44ef-9f45-3e77c036b6b5 * fix(copilot): preserve layout state during migration Keep target integration options isolated from fallback state, prefer the Copilot manifest when resolving layouts, and update dispatch coverage for the skills-first default. Assisted-by: GitHub Copilot (model: GPT-5.6 Sol, autonomous) Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com> Copilot-Session: 930d846b-8921-44ef-9f45-3e77c036b6b5 --------- Copilot-Session: 930d846b-8921-44ef-9f45-3e77c036b6b5 |
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e9ffc9d8e7 |
feat: allow overriding default init integration via SPECKIT_INTEGRATION_DEFAULT (#3952)
* feat: allow overriding default init integration via SPECKIT_INTEGRATION_DEFAULT Resolve the non-interactive/init default integration from the SPECKIT_INTEGRATION_DEFAULT environment variable, fitting the existing SPECKIT_INTEGRATION_* namespace. Falls back to the hardcoded "copilot" default when unset, and warns to stderr (rather than silently falling back) when the value is not a registered integration key. Wires the resolver into specify init (interactive prompt default and non-interactive fallback), the init workflow step, and the bundle init default. Adds unit and CLI tests and documents the variable. Closes #3939 Assisted-by: GitHub Copilot (model: claude-opus-4.8, autonomous) Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com> Copilot-Session: eecda55f-fa13-42f7-99bf-bfb0bb8565a0 * test: cover env-var default wiring for picker, workflow step, and bundle Address PR review: add regression tests so each SPECKIT_INTEGRATION_DEFAULT wiring site cannot silently revert to the hardcoded constant. - init.py: interactive picker receives the resolved key as default_key. - workflow init step: no step/workflow default + env var drives output integration and argv. - bundle _resolve_init_integration: env-var default applies when unspecified, while explicit override and manifest-declared integration still win. Assisted-by: GitHub Copilot (model: claude-opus-4.8, autonomous) Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com> Copilot-Session: eecda55f-fa13-42f7-99bf-bfb0bb8565a0 --------- Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com> Copilot-Session: eecda55f-fa13-42f7-99bf-bfb0bb8565a0 |
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4751777a38 |
Add adrkit extension to community catalog (#3947)
Add adrkit extension submitted by @mbeacom to: - extensions/catalog.community.json (alphabetical order) - docs/community/extensions.md community extensions table Closes #3942 Assisted-by: GitHub Copilot (model: claude-sonnet-4.6, autonomous) Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> |
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cf71d00dfe |
fix(workflows): reject a retry gate whose verdict enum forbids the reset value (#3912)
A gate with `on_reject: retry` consumes a bound reject verdict before
pausing by resetting the named input to `""` (documented behaviour, so a
later resume prompts again). Every `resume()` re-resolves the persisted
inputs through `_coerce_input`.
Those two rules collide when the bound input declares an `enum` that does
not list `""`. The reset writes a value the input's own enum forbids, and
the run wedges:
inputs:
spec_verdict:
type: string
enum: [approve, reject]
steps:
- id: review
type: gate
options: [approve, reject]
on_reject: retry
verdict_input: spec_verdict
$ specify workflow run wf --input spec_verdict=reject
Status: paused
$ specify workflow resume <run_id> --input note=b
Error: Input 'spec_verdict' value '' not in allowed values:
['approve', 'reject'].
The workflow validates clean and the first run looks fine, so the failure
only appears at the second resume. It is also unrecoverable in practice:
`_resolve_inputs` re-coerces the whole persisted map, so *any* resume that
supplies an input dies on the stored `""`. Only a resume with no inputs at
all still works -- and that is precisely the call that cannot deliver a new
verdict, which is the one thing the retry cycle exists to allow.
Extend the existing `verdict_input` cross-check (which already confirms the
name is declared) to also require that a retry-bound input's `enum` admits
the reset sentinel, and report it with a fix hint. To do that, thread the
input *definitions* through `_validate_steps` instead of just their names.
Rejected the alternative of popping the key instead of writing `""`: that
lets the input's `default` flow back in on the next resume, so a gate the
user just rejected would silently auto-approve.
Docs: note the `enum` requirement next to the reset behaviour it follows
from.
Adds 4 validation tests for the new guard plus a characterization test that
drives the engine directly to pin the wedge it prevents.
Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
Assisted-by: Claude Opus 5 (1M context)
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a3e183d069 |
feat: support tar archives for installs (#3874)
* feat: support tar archives for installs Add secure .tar.gz and .tgz parity with ZIP installation for extensions, presets, and workflows, including full workflow package preservation. Assisted-by: GitHub Copilot (model: GPT-5.6 Sol, autonomous) Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com> Copilot-Session: bd07c6b3-f1f9-484c-869a-94d8fef970dd * chore: clean rebased archive imports Assisted-by: GitHub Copilot (model: GPT-5.6 Sol, autonomous) Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com> Copilot-Session: bd07c6b3-f1f9-484c-869a-94d8fef970dd * fix: preserve hardened archive install behavior Keep malformed ZIP diagnostics, filesystem-independent manifest selection, and reserved workflow overlays consistent after adding generic archive support. Assisted-by: GitHub Copilot (model: GPT-5.6 Sol, autonomous) Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com> Copilot-Session: bd07c6b3-f1f9-484c-869a-94d8fef970dd * fix: extract staged workflow archives by descriptor Avoid reopening a held staging path on Windows while retaining authoritative-inode archive validation. Assisted-by: GitHub Copilot (model: GPT-5.6 Sol, autonomous) Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com> Copilot-Session: bd07c6b3-f1f9-484c-869a-94d8fef970dd * fix: extract catalog archives from verified bytes Use the already bounded and SHA-verified response bytes directly so Windows file-sharing semantics cannot affect archive detection. Assisted-by: GitHub Copilot (model: GPT-5.6 Sol, autonomous) Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com> Copilot-Session: bd07c6b3-f1f9-484c-869a-94d8fef970dd * fix: address archive install review feedback Preserve forced preset reinstalls, sniff suffixless workflow archives without weakening YAML limits, and restore prior workflow packages before failed-install cleanup. Assisted-by: GitHub Copilot (model: GPT-5.6 Sol, autonomous) Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com> Copilot-Session: bd07c6b3-f1f9-484c-869a-94d8fef970dd --------- Copilot-Session: bd07c6b3-f1f9-484c-869a-94d8fef970dd |
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43a54bf2d6 |
feat(presets): add opt-in constitution-sync preset (#3873)
* feat(presets): add opt-in constitution-sync preset Follow-up to #3790, which removed the consistency-propagation pass from the core /constitution command in favor of runtime resolution. Teams that treat materialized plan/spec/tasks templates as reviewed, committed artifacts lost the auto-sync of amended constitutional guidance on a non-forced upgrade. Add a bundled, opt-in `constitution-sync` preset that restores that behavior via a wrap-strategy override of speckit.constitution (composes on {CORE_TEMPLATE} so it stays forward-compatible). It only writes into the project's own .specify/templates scaffolds and installed command files, never into stack-owned template layers. - presets/constitution-sync/: preset.yml (requires >=0.14.4), wrap command, README documenting the tension between auto-propagation and the resolution stack - presets/catalog.json: bundled entry - docs/upgrade.md: document the 0.14.4 behavior change and the opt-in - tests/test_presets.py: structural + composition coverage (TestConstitutionSyncPreset) Assisted-by: GitHub Copilot (model: Claude Opus 4.8, supervised) Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com> Copilot-Session: afa7c1d2-147b-4f62-a6fc-a2cc824cfa3e * fix(presets): ship constitution-sync in wheel, clarify scope guard, assert composition Address review feedback on #3873: - pyproject.toml: force-include presets/constitution-sync into the wheel's core_pack so `_locate_bundled_preset` resolves it in a released install; the bundled advertisement was otherwise unshippable. - tests/contract/test_wheel_bundled_presets.py: new contract test asserting every bundled preset in presets/catalog.json is force-included (guards lean too). - commands/speckit.constitution.md: explicitly state the propagation section supersedes the core Scope Guard, which otherwise says dependent templates are not modified here. - tests/test_presets.py: assert resolve_content substitutes {CORE_TEMPLATE} and the effective command embeds both the core body and the sync pass. Assisted-by: GitHub Copilot (model: Claude Opus 4.8, supervised) Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com> Copilot-Session: afa7c1d2-147b-4f62-a6fc-a2cc824cfa3e * test(presets): parse frontmatter as YAML in constitution-sync wrapper test Address review feedback on #3873: assert `strategy: wrap` structurally by parsing the Markdown frontmatter as YAML (instead of a substring match that could false-positive on body text), and assert {CORE_TEMPLATE} in the body section only. Assisted-by: GitHub Copilot (model: Claude Opus 4.8, supervised) Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com> Copilot-Session: afa7c1d2-147b-4f62-a6fc-a2cc824cfa3e * docs(presets): reframe constitution-sync README around behavior and caveats Rework the preset's user-facing docs to describe what it does, what it does not do, and the caveats you take on — rather than leading with version/origin history. The preset stack is the project's forward direction, so the README no longer positions this as "restoring pre-0.14.4 behavior." Also make the edit-in-place vs. composition conflict explicit and consistent across the wrapper command and docs: propagation into command files/templates that are provided or wrapped by a preset/extension is clobbered on stack reconciliation (integration use/upgrade, preset/extension install/remove), so the wrapper restricts propagation to project-local artifacts the team owns. - README: forward-looking "What it does / does not do / When to use / Caveats" - speckit.constitution.md: step 4 no longer hand-edits composed command files; closing caveat covers command files too - docs/upgrade.md: note the composition-model conflict in the opt-in section - tests: assert the updated closing-caveat wording Assisted-by: GitHub Copilot (model: Claude Opus 4.8, supervised) Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com> Copilot-Session: afa7c1d2-147b-4f62-a6fc-a2cc824cfa3e * docs(presets): tweak constitution-sync README default-behavior wording Phrase the default-behavior note as "the current version of Spec Kit" and rewrap the opening paragraph. Assisted-by: GitHub Copilot (model: Claude Opus 4.8, supervised) Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com> Copilot-Session: afa7c1d2-147b-4f62-a6fc-a2cc824cfa3e * docs(presets): keep emphasis spans on one line in constitution-sync README Avoid **bold** spans broken across soft line breaks (runtime resolution, reviewed committed artifacts) so they render consistently. Assisted-by: GitHub Copilot (model: Claude Opus 4.8, supervised) Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com> Copilot-Session: afa7c1d2-147b-4f62-a6fc-a2cc824cfa3e * docs(presets): refocus constitution-sync README on what it restores Reframe the intro around what the preset restores and what the user opts into, rather than describing current Spec Kit default behavior. Be honest that propagation was removed deliberately (duplicates the source of truth, fights composition) and this preset knowingly reintroduces it and its tradeoffs. Minor flow fixes (comma splice, terse bullet). Assisted-by: GitHub Copilot (model: Claude Opus 4.8, supervised) Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com> Copilot-Session: afa7c1d2-147b-4f62-a6fc-a2cc824cfa3e * docs(upgrade): de-pin version from /constitution behavior-change section The upgrade guide always describes the latest version, so hard-pinning "0.14.4" in the heading and "Starting in 0.14.4" in the body added no value. Keep the #3790 provenance link and the "no longer propagates" framing; the machine-readable version gate stays in preset.yml. Assisted-by: GitHub Copilot (model: Claude Opus 4.8, supervised) Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com> Copilot-Session: afa7c1d2-147b-4f62-a6fc-a2cc824cfa3e * docs(upgrade): clarify non-breaking nuance and presets direction Note that the /constitution scope change is only noticeable if you relied on the old edit-in-place behavior, and add the forward-looking framing: presets and extensions — not in-place file edits — are how Spec Kit now governs, versions, and audits shared assets across repositories. Assisted-by: GitHub Copilot (model: Claude Opus 4.8, supervised) Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com> Copilot-Session: afa7c1d2-147b-4f62-a6fc-a2cc824cfa3e --------- Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com> Copilot-Session: afa7c1d2-147b-4f62-a6fc-a2cc824cfa3e |
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fdfc5ae330 |
Add ContextForge MCP extension to community catalog (#3487)
Add contextforge-mcp extension submitted by @capatinore to: - extensions/catalog.community.json (alphabetical order) - docs/community/extensions.md community extensions table Closes #3456 Assisted-by: GitHub Copilot (model: claude-sonnet-4.6, autonomous) Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> |
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675143591d |
feat: bind gate verdict to workflow input via verdict_input (#3725)
* feat: bind gate verdict to workflow input via verdict_input Add an optional `verdict_input` field to gate steps that lets an external system supply a verdict through a declared workflow input instead of an interactive TTY prompt. When the referenced input carries a non-empty string value that matches one of the gate's `options` (case-insensitive), the gate auto-decides, records the matched spelling in `output.choice`, and applies the existing `on_reject` / abort / skip / retry semantics. If the value is present but does not match an option, or is a non-string, the gate fails immediately with a clear error message. When the input is absent, null, or empty, the gate falls back to today's TTY-prompt-or-pause behaviour unchanged. The engine now persists `result.error` alongside each step's status and output so that failed-step error messages survive across runs. The CLI (`workflow run` and `workflow resume`) surfaces these persisted errors after a failed or aborted run. `validate_workflow` cross-references `verdict_input` against the workflow's declared inputs block and reports an error for undeclared names, consistent with the existing `wait_for` id cross-check. Closes discussion: https://github.com/github/spec-kit/discussions/3717 Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> Assisted-by: GitHub Copilot (model: claude-sonnet-4.6, autonomous) * Potential fix for pull request finding Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com> * Fix workflow JSON error payloads Include persisted step errors in _workflow_run_payload so workflow run/resume/status --json all surface failure reasons consistently. Add JSON-path tests for failed and successful runs. Assisted-by: GitHub Copilot (model: gpt-5.3-codex, autonomous) Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * Potential fix for pull request finding Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com> * fix(workflows): reject verdict inputs in fan-out Fan-out items share workflow inputs and cannot safely consume a bound gate verdict. Reject verdict_input bindings during validation and at runtime while preserving unbound gates. Assisted-by: GitHub Copilot (model: GPT-5.6 Sol, autonomous) Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix: update workflow command handling Assisted-by: GitHub Copilot (model: gpt-5.3-codex, autonomous) Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> --------- Co-authored-by: Markus <markus@example.com> Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com> |
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5827db5359 |
Add Intent Reconciliation extension to community catalog (#3858)
Add `intent` extension submitted by @SuhaibAslam to: - extensions/catalog.community.json (inserted alphabetically between intake and issue) - docs/community/extensions.md community extensions table This revision limits the catalog change to the intent addition and the top-level updated_at bump only, reverting the unrelated re-serialization (entry reordering, \u2014 Unicode escaping, tool-array reformatting) that a reviewer flagged. Closes #3854 cc @SuhaibAslam Assisted-by: GitHub Copilot (model: Claude Opus 4.8, autonomous) Co-authored-by: Manfred Riem <15701806+mnriem@users.noreply.github.com> Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com> |
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4ad7ef2b42 |
Update Agent Parity Governance preset to v0.4.1 (#3830)
Update agent-parity-governance preset submitted by @hindermath to: - presets/catalog.community.json (version, download_url, documentation, description, updated_at) - docs/community/presets.md community presets table Closes #3829 Assisted-by: GitHub Copilot (model: claude-sonnet-4.6, autonomous) Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> |
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0231ee056b |
[preset] Update A11Y Governance preset to v0.4.2 (#3828)
* Update A11Y Governance preset to v0.4.2 Update a11y-governance preset submitted by @hindermath to: - presets/catalog.community.json (version, download_url, documentation, description, updated_at) - docs/community/presets.md community presets table Closes #3827 Assisted-by: GitHub Copilot (model: claude-sonnet-4.6, autonomous) Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * Potential fix for pull request finding Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com> --------- Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> Co-authored-by: Manfred Riem <15701806+mnriem@users.noreply.github.com> Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com> |
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ca2b494335 |
[preset] Update Parallel Autonomous Run Governance to v0.2.4 (#3825)
* Update Parallel Autonomous Run Governance preset to v0.2.4 Update parallel-autonomous-run-governance preset submitted by @hindermath: - presets/catalog.community.json (version, download_url, documentation, description, requires.extensions, tags, updated_at) - docs/community/presets.md community presets table Closes #3824 Assisted-by: GitHub Copilot (model: claude-sonnet-4.6, autonomous) Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * Potential fix for pull request finding Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com> --------- Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> Co-authored-by: Manfred Riem <15701806+mnriem@users.noreply.github.com> Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com> |
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9bb7206d3b |
Update Autonomous Run Governance preset to v0.3.3 (#3823)
Update autonomous-run-governance preset submitted by @hindermath to: - presets/catalog.community.json (version, download_url, documentation, description, tags, updated_at) - docs/community/presets.md community presets table Closes #3821 Assisted-by: GitHub Copilot (model: claude-sonnet-4.6, autonomous) Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> |
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186ca25c99 |
Update Intake Sequencing Governance preset to v0.2.2 (#3809)
Update intake-sequencing-governance preset submitted by @hindermath to: - presets/catalog.community.json (version, download_url, documentation, description, provides) - docs/community/presets.md community presets table Closes #3807 Assisted-by: GitHub Copilot (model: claude-sonnet-4.6, autonomous) Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> |
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809b4c5e26 |
Update Intake Review Governance preset to v0.2.0 (#3796)
Update intake-review-governance preset submitted by @hindermath: - presets/catalog.community.json (version, download_url, documentation, description, scripts, tags) - docs/community/presets.md community presets table Closes #3794 Assisted-by: GitHub Copilot (model: claude-sonnet-4.6, autonomous) Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> |
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d8d62756fe |
Update Intake Authoring Governance preset to v0.3.0 (#3788)
Update intake-authoring-governance preset submitted by @hindermath to: - presets/catalog.community.json (version, download_url, documentation, description, provides, tags, updated_at) - docs/community/presets.md community presets table Closes #3780 Assisted-by: GitHub Copilot (model: claude-sonnet-4.6, autonomous) Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> |
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7fc5b236c8 |
feat: Add Alquimia AI integration (#2734)
* Add alquimia-ai as new integration: https://alquimia.ai * Fix test cases for alquimia-ai integration. Add alquimia-ai to workflow.yml * Add install url to alquimia-ai integration * Renamed alquimia-ai to alquimia (cli native denomination) * Fix unit tests for alquimia integration * Minor fix in alquimia integration * Fix typos and copilot findings * Potential fix for pull request finding Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com> * Potential fix for pull request finding Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com> * Update tests cases and lint formatting * Final fixes * Rename alquimia_ai to alquimia module integration * Make cli optional for alquimiia integration * resolve review comments * Fix copilot review * Minor fixes: naming, remove unused code * Update tests cases. Fix issues * Fix unit tests * Add alquimia context to default agent-context extension. Update cli requirment to support workflows * Fix hints (suggestion) * Add Alquimia AI as agent in github issue template. Fix unit tests * Address review comments. Update docs * Update test cases --------- Co-authored-by: Eric Engstfeld <ericengstfeld@Erics-MacBook-Pro.local> Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com> |
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683bfd00c9 |
fix: register extensions for the active integration only (#3459)
* fix: register extensions for the active integration only extension add registered commands for every detected agent, and integration upgrade back-filled enabled extensions for non-active integrations. Maintainer direction on #2948: treat the project as single-active. Only the active integration gets extension artifacts; use/switch rescaffold the target when the user selects it. - extension add now routes through the all-agents pass restricted to the active integration (only_agent), keeping detection and missing-skills-dir recovery safeguards. Projects without recorded init-options fall back to detection-based registration. - integration upgrade re-registers extensions only when upgrading the active integration, reversing the #2886 back-fill for non-active targets at maintainer request. Fixes #2948 Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix: address review feedback on active-only extension registration - Restrict the extension-add active-integration fallback to projects with no recorded active key at all. A recorded but unsupported key (e.g. "generic", deliberately excluded from AGENT_CONFIGS) no longer falls back to registering every detected agent. - Apply the same single-active rule to preset command overrides: PresetManager._register_commands now scopes registration to the active integration via only_agent. - Add PresetManager.register_enabled_presets_for_agent, mirroring ExtensionManager.register_enabled_extensions_for_agent, and call it from integration use/switch/upgrade (active only) alongside the existing extension re-registration so presets are rescaffolded on activation instead of being written for inactive integrations. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix: address second round of review feedback (priority order, fail-closed, docs) - register_enabled_presets_for_agent now processes presets in reverse priority order (lowest-precedence first) so the highest-precedence preset is written last and actually wins after `integration use` rescaffolds two overlapping preset command overrides. Verified this reproduces the previously reported reversed-priority bug and that the fix resolves it. - _register_commands_for_active_agent now checks for the "ai" key's presence separately from its value: a missing key still falls back to detection-based registration for all agents, but a recorded, malformed value (non-string or empty, e.g. [] or null) now fails closed (registers nothing) instead of being treated as "no active integration" or reaching AGENT_CONFIGS.get() with an unhashable key and raising TypeError. - Updated docs/reference/presets.md and docs/reference/integrations.md to describe active-only preset/extension registration and clarify that `integration use`/`switch` is the activation point for installed extensions and presets, and that `upgrade` only re-registers them for the active integration. Adds regression tests: two enabled presets overriding the same command with different priorities (priority winner must survive `use` rescaffolding), and a malformed recorded `ai` value ([]) for `extension add`. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix: address third round of review feedback (multi-integration semantics) Fixes five deeper active-only registration bugs surfaced by Copilot review after 2486c08, all in the presets/extensions single-active integration rule (#2948): 1. presets: _reconcile_composed_commands (run after install/remove) bypassed the active-only filter entirely, writing composition-winner command files for every detected non-skill agent via register_commands_for_non_skill_agents. Added an only_agent param to that registrar method (mirroring register_commands_for_all_agents) and threaded it through all 5 reconciliation call sites. 2. presets: `integration use copilot` with --skills (ai_skills: true) wrote both the static .agent.md command file AND the SKILL.md mirror for the same override. Mirrored the extension path's ai_skills guard in both _register_commands and the reconciliation pass: a command-backed active agent running in skills mode is excluded from non-skill command registration. 3. presets: registered_skills was a flat list, so switching between two skill-mode agents (e.g. Claude -> Codex) and then removing the preset only restored the currently active agent's directory, permanently orphaning the other. _unregister_skills now restores every existing skill-mode agent directory instead of only the active one. 4. extensions: load_init_options() collapses "no file" and "corrupted file" into the same {}, so the round-2 fail-closed fix didn't actually distinguish them. Added a shared resolve_active_agent_for_registration() helper in _init_options.py that checks file existence separately from parse success, returning a distinct sentinel for "file absent" vs None for "corrupted or invalid". extensions/__init__.py now uses this helper. 5. presets: same corruption-collapsing bug in _register_commands's active_agent resolution. Now uses the same shared helper as (4). Adds regression tests for all five: reconciliation active-only filtering, copilot --skills dual-write prevention, multi-skill-agent switch+remove, and corrupted init-options fail-closed behavior for both extension add and preset add. Each test was verified to fail against the pre-fix code and pass with the fix. Targeted (883) and full (3923 passed, 109 skipped) suites pass; ruff check clean. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix: address fourth round of review feedback (skill registration provenance) Replace the "enumerate every skill-mode directory and restore all of them" approach from the previous round with precise per-agent provenance tracking, per reviewer feedback that the enumerate-and-restore-everything design was unsound: - registered_skills changes from a flat List[str] to Dict[str, List[str]] (agent name -> skill names actually written), mirroring the shape registered_commands already uses. _register_skills now returns this per-agent mapping instead of a bare list, and every call site (register_enabled_presets_for_agent, install_from_directory, the _reconcile_skills "was this skill previously managed" check) is updated to read/merge the new shape. Legacy flat-list registry entries from before this change are still readable: writes self-migrate the format, and _normalize_registered_skills() handles the transitional read paths. - _unregister_skills now restores exactly the agent directories recorded for a preset instead of guessing at every skill-mode integration that happens to exist on disk. This fixes two problems with the old enumerate-everything design: (1) it could silently overwrite or delete another preset's (or a user's) override in an agent directory the current preset never actually touched, and (2) it depended on transient per-process integration state (_skills_mode), which is unset in a fresh CLI invocation for mode-selectable integrations like Copilot --skills, permanently orphaning their overrides after a process restart. Registries written before this change (flat list, no agent provenance) fall back to best-effort restoration under only the currently active agent, matching the pre-existing guarantee level. - Every directory resolved from persisted provenance is now validated through the project's shared symlink/containment guard (_ensure_safe_shared_directory) before any file in it is read, written, or removed, since restoration may target an agent that isn't currently active and its directory can't be assumed safe just because a name was recorded for it. - _tracked_skill_agent_dirs() (the enumeration helper introduced last round) is removed; it's superseded by the provenance-based design. Adds regression tests: a symlinked skills directory is rejected during removal; removing one preset does not disturb a different preset's override in another agent's directory; and a Copilot --skills registration installed, then removed after switching agents in a fresh PresetManager instance (simulating a new process), is still correctly restored. Updates existing skill-registration assertions across test_presets.py and test_integration_claude.py for the new per-agent registry shape. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix: address fifth round of review feedback (symlink presence, rescaffold reconciliation, shared skills dir) - _init_options.py: resolve_active_agent_for_registration() now treats a dangling init-options.json symlink as present (path.is_symlink() check alongside path.exists()), since Path.exists() follows symlinks and returns False for a broken one. Previously a broken symlink fell back to the legacy "no file" path and registered every detected agent instead of failing closed. - presets/__init__.py (register_enabled_presets_for_agent): the integration use/switch rescaffold path now collects affected command names across all presets processed and runs _reconcile_composed_commands/_reconcile_skills once after the loop, matching install/remove. Previously rescaffolding wrote each preset's raw content directly with no follow-up reconciliation, so a project-level override (the highest-priority layer) could be clobbered by a lower-precedence preset after switching agents. - presets/__init__.py (_unregister_skills): multiple integrations can share one physical skills directory (agy/codex/zed all resolve to .agents/skills). Provenance restoration now groups recorded agent entries by resolved directory and restores each physical directory exactly once, preferring the currently active agent's renderer when it owns that directory (otherwise any recorded owner, chosen deterministically). Previously each recorded agent key triggered its own restore pass against the same directory, with whichever agent was iterated last silently winning regardless of which agent was active. Adds regression tests for each: a dangling init-options.json symlink failing closed for both preset resolution and extension add; integration use rescaffold preserving a project override over a lower-priority preset; and a codex/agy shared-directory removal restoring the directory exactly once in the active agent's format. Targeted (tests/integrations/test_integration_subcommand.py, tests/test_presets.py, tests/test_extensions.py, tests/test_extension_skills.py, tests/integrations/test_integration_opencode.py, tests/integrations/test_integration_claude.py): 930 passed. Full suite: 3930 passed, 109 skipped. ruff check: clean on files touched by this change. Refs #2948 Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix: guard skill subdirectories and active-agent scoping in preset reconciliation Fix 4 issues from round-6 review of the active-only integration registration work (#2948): - remove(): removed_cmd_names only collected primary command names from registered_commands + manifest aliases, missing commands that were only ever registered via skills mode (ai_skills guard returns no command names for command-backed integrations in skills mode). This skipped reconciliation entirely when removing a higher-priority skills-mode preset, causing _unregister_skills() to fall back to core/extension content instead of the surviving lower-priority preset's override. Now every command template's primary name is added to removed_cmd_names unconditionally. - _reconcile_composed_commands(): the "composed is None" branch (fires when no replace-strategy layer remains for a command, e.g. after removing a wrap/append preset's base) called unregister_commands() across every configured non-skill agent, ignoring only_agent. This deleted historical artifacts from integrations that were never active for the preset. Now filtered by only_agent like the rest of the file. - Added _validate_skill_subdir() helper (reusing _ensure_safe_shared_directory/_validate_safe_shared_directory from shared_infra.py) and applied it at every site that reads or writes an individual skill subdirectory (_register_skills, _unregister_skills_in_dir, _reconcile_skills' override_skills restoration loop). _safe_skills_dir_for_agent only validated the parent skills directory; a symlinked leaf subdirectory (e.g. .claude/skills/speckit-specify) would slip past that check since is_dir()/exists() follow symlinks, letting write_text/rmtree operate through it to an arbitrary location outside the project. Added regression tests: removing a higher-priority skills-only preset restores the surviving lower-priority preset's content; composed-is-None unregistration only touches the active agent; symlinked skill subdirectory rejected on restore; symlinked skill subdirectory rejected on write. Targeted (934) and full (3934 passed, 109 skipped) test suites and ruff check pass clean. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix: persist command registration before fallible skills phase on rescaffold Fix remaining round-6 review findings on the active-only integration registration work (#2948): - register_enabled_presets_for_agent(): registered_commands and registered_skills were merged and persisted together in a single registry.update() call after both the commands and skills phases ran. If _register_skills() raised, the per-preset try/except swallowed it before that update() call was reached, even though _register_commands() had already written a real command file to disk. That file became untracked, so preset removal could no longer clean it up. install_from_directory() already persists registered_commands immediately after the commands phase, before starting the independently fallible skills phase; rescaffold now does the same. - test_presets.py: renamed a misleading claude_dir variable (pointing at Gemini's command directory) in test_composed_none_unregister_respects_active_agent to reuse the existing gemini_commands_dir variable already defined earlier in the same test. Added regression test test_rescaffold_persists_commands_before_fallible_skills_phase: simulates a skills-phase failure during rescaffold and asserts the command file already written to disk is still tracked in registered_commands. Verified all other round-6 findings (preset active-integration scoping, preset reconciliation/remove paths, skills-mode switching, override precedence during rescaffold, skill-subdirectory symlink safety) are already addressed by prior commits in this branch; re-checked each against current code before concluding no further change was needed. Targeted (tests/test_presets.py, tests/test_extensions.py: 689 passed) and full (3935 passed, 109 skipped) suites and ruff check on changed files pass clean. Assisted-by: GitHub Copilot (model: Claude Sonnet 5, autonomous) Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix: unregister stale opposite-mode preset artifact on same-agent skills toggle Fix an Important gap in register_enabled_presets_for_agent() surfaced by quality review (#2948): toggling ai_skills for the *same already-active* command-backed agent (e.g. `integration upgrade copilot` after flipping ai_skills, with copilot staying active throughout) left a stale artifact from the previous mode behind, violating the command/skill mutual- exclusion invariant this PR otherwise enforces. - command -> skills: _register_commands()'s ai_skills guard makes the commands phase a no-op, but the previously-written command file (e.g. .agent.md) and its registered_commands[agent] entry were never cleaned up, so it lingered alongside the newly written SKILL.md. - skills -> command: _get_skills_dir() stops resolving a skills directory once ai_skills is off, making the skills phase a no-op, but the previously-written SKILL.md and its registered_skills[agent] entry were never cleaned up, so it lingered alongside the newly (re)written command file. register_enabled_presets_for_agent() now resolves once per call whether agent_name is a command-backed integration (extension != "/SKILL.md") and the current ai_skills state, then narrowly unregisters the stale opposite- mode entry for that agent via the existing _unregister_commands / _unregister_skills helpers before persisting updated tracking — mirroring the same per-agent, per-preset isolation already used elsewhere in this method. Native skill-only agents (claude, codex, ...) are unaffected: they have no command/skill toggle, so registered_commands and registered_skills legitimately co-exist for them by design. The trailing reconciliation pass, project-override precedence, and per-preset partial-failure isolation are all unchanged. Added red-first regression tests exercising the real install + register_enabled_presets_for_agent rescaffold path in both toggle directions: - test_rescaffold_toggle_command_to_skills_removes_stale_command_file - test_rescaffold_toggle_skills_to_command_removes_stale_skill_file Both failed against the prior code (stale artifact persisted / registry still tracked it) and pass after the fix. Targeted (tests/test_presets.py, tests/test_extensions.py: 691 passed) and full (3937 passed, 109 skipped) suites and ruff check on changed files pass clean. Assisted-by: GitHub Copilot (model: Claude Sonnet 5, autonomous) Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix: migrate legacy flat-list registered_skills on rescaffold even when unchanged Fix a valid finding from GitHub Copilot's review of HEAD b9d9053 (#2948): register_enabled_presets_for_agent() normalizes a legacy flat-list registered_skills value (predating per-agent provenance) to the {agent_name: [...]} dict shape in memory via _normalize_registered_skills, but the persistence check only compared the two *normalized* forms. When the freshly rescaffolded skill names are identical to what the legacy list already held — the common case, since nothing about the preset or skill actually changed — that comparison is a no-op and registry.update() is skipped, leaving the *raw* on-disk value as the un-migrated flat list. A later switch to a different skill-mode agent and removal then follows _unregister_skills's legacy best-effort path (restore only the currently active agent's directory) instead of the per-agent provenance path, permanently orphaning the first agent's override. Fix: track the raw (pre-normalization) existing value and force persistence whenever it's a non-empty list, independent of whether the normalized content changed. Traced registered_commands for the same class of bug: its registry value has always been Dict[str, List[str]] (no legacy flat-list format ever existed for it — the existing `if not isinstance(existing_commands, dict): existing_commands = {}` guard is not a lossy migration path), so this fix stays scoped to registered_skills only. Added red-first regression test test_rescaffold_migrates_legacy_flat_list_registered_skills: installs a preset, overwrites its registry entry with a raw legacy flat list, rescaffolds the *same* active agent with unchanged skill names, and asserts the raw registry is migrated to per-agent dict form. Extends the scenario with a switch to a second skill-mode agent and preset removal to prove both agents' directories restore cleanly instead of orphaning the first. Failed against the prior code (raw value stayed a list) and passes after the fix. Targeted (tests/test_presets.py, tests/test_extensions.py: 692 passed) and full (3938 passed, 109 skipped) suites and ruff check on changed files pass clean. Assisted-by: GitHub Copilot (model: Claude Sonnet 5, autonomous) Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix: reconcile before fallible skills phase, infer legacy skill provenance, and unregister stale extension artifacts on toggle Three findings from the Copilot review on HEAD b9d9053/3a1e749: 1. `register_enabled_presets_for_agent()` only recorded a preset's command names into `affected_cmd_names` (the set later passed to `_reconcile_composed_commands`/`_reconcile_skills`) in the loop that ran *after* `_register_skills()`, inside the same per-preset `try` block. If `_register_skills` raised, the `except` caught it and `continue`d before that loop ever ran — so a preset whose commands phase already wrote real content to disk never got reconciled against the full priority stack, leaving its raw content in place instead of a project override or higher-precedence preset's content. Fix: record the manifest's command names immediately after the commands phase succeeds and persists, before calling the independently fallible `_register_skills()`. 2. The legacy flat-list `registered_skills` migration (added for the previous review round) attributed every name in the list to whichever agent was currently being (re)activated. If the first operation after upgrading from a pre-#2948 registry was a direct switch to a *different* skill-mode agent (e.g. a legacy Claude override, then `integration use codex` with no intervening Claude rescaffold), the migrated dict only recorded `{"codex": [...]}`, permanently losing Claude's actual provenance and orphaning its override on later removal. Fix: added `_infer_legacy_skill_provenance()`, which probes every configured skill-mode agent's directory (via the same safe, symlink-validated helpers already used for restore/removal) for a `SKILL.md` whose frontmatter records this exact preset as the owner (`metadata.source == "preset:<pack_id>"`). A name found under more than one directory is attributed to every matching agent (the preset may have been active while the user switched between several skill-mode agents before provenance tracking existed); names that can't be matched to any directory still fall back to the previously-active best-effort behaviour. Directory grouping for shared-path aliases (e.g. agy/codex/zed all resolving to `.agents/skills`) intentionally does not call `.resolve()` on the path, since doing so diverges from `project_root`'s own resolution state on platforms where a path component is itself a symlink (e.g. macOS's `/var` -> `/private/var`) and made every subsequent containment check spuriously fail. 3. `register_enabled_extensions_for_agent()` has the same command/skill mutual-exclusion gap the preset path had (fixed in a previous round): toggling `ai_skills` for the *same active* agent left the opposite mode's artifact behind. Command -> skills left the extension's `.agent.md` file and its `registered_commands[agent]` entry in place once `skills_mode_active` made the commands phase a no-op. Skills -> command left the extension's `SKILL.md` file in place, since an empty `_register_extension_skills()` result (because this agent's skills directory no longer resolves once `ai_skills` is off) was treated as "nothing to register" rather than "this was rendered here before and is now stale". This diverges from the preset path in one respect: `registered_skills` for extensions has always been a flat list with no per-agent provenance (extension skills are only ever rendered for the active agent, never per-preset-per-agent tracked), so the fix resolves ownership by checking which of the extension's tracked skill names still exist as directories under this specific agent's directory before removing them — mirroring the same technique `unregister_agent_artifacts` already uses for full agent deactivation, but scoped narrowly to firing only when a toggle is actually detected (`skills_mode_active` / `command_mode_active`), so a same-mode re-run never disturbs already-correct artifacts or a user's manual customizations. Regression tests (all confirmed red before their respective fix, green after): - tests/test_presets.py::TestPresetSkills::test_rescaffold_reconciles_override_even_when_skills_phase_fails - tests/test_presets.py::TestPresetSkills::test_rescaffold_legacy_flat_list_direct_switch_preserves_original_agent - tests/test_extension_skills.py::TestExtensionSkillRegistration::test_rescaffold_toggle_command_to_skills_removes_stale_extension_command_file - tests/test_extension_skills.py::TestExtensionSkillRegistration::test_rescaffold_toggle_skills_to_command_removes_stale_extension_skill_file Verification: tests/test_presets.py + tests/test_extensions.py + tests/test_extension_skills.py (753 passed), tests/integrations/ (1768 passed, 1 skipped), full suite `pytest tests -q` (3942 passed, 109 skipped), `ruff check` on changed files clean. Assisted-by: GitHub Copilot (model: Claude Sonnet 5, autonomous) Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix: broaden legacy skill provenance inference to command-backed agents _infer_legacy_skill_provenance() only probed agents whose registrar config statically declares extension == "/SKILL.md", excluding command-backed agents (e.g. Copilot) that can also render preset overrides as SKILL.md files when ai_skills is enabled. A real preset-owned .github/skills/.../SKILL.md written while Copilot was the active skills-mode agent was therefore never probed and got misattributed entirely to whichever agent activated first after the upgrade, permanently orphaning Copilot's override on later removal. Broaden the candidate set to every configured integration (CommandRegistrar.AGENT_CONFIGS), reusing the existing safe-path helper (_safe_skills_dir_for_agent, itself built on the shared _get_skills_dir resolver) rather than inventing new path-construction logic. The existing preset-marker match (metadata.source == "preset:<pack_id>") continues to gate every attribution, so command-mode agents that never rendered this preset's skill are not falsely attributed. Add red-first regression tests: a legacy flat-list entry owned by Copilot in skills mode, switched directly to Claude with no intervening Copilot rescaffold, now migrates to a per-agent dict covering both agents, and removal restores both agents' files instead of orphaning Copilot's override; plus a negative-case test confirming a command-mode Copilot with no preset-owned skill marker is not falsely attributed during the same migration. Assisted-by: GitHub Copilot (model: Claude Sonnet 5, autonomous) Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix: preserve extension skill tracking for mirrors in other agent dirs The skills -> command toggle cleanup in register_enabled_extensions_for_agent() recomputed the remaining tracked registered_skills names by checking only the toggling agent's own skills directory. Since registered_skills is a single flat list shared across every agent an extension has ever been activated under (skills are only ever rendered for the active agent, so there is no per-agent registry key), a name whose mirror still existed under a *different*, previously-active agent's directory was incorrectly dropped from tracking as soon as the current agent's own copy was removed. A later full removal only iterates registered_skills, so the orphaned mirror under the other agent's directory was never found or cleaned up. Add _extension_owned_skill_names(), which re-verifies ownership across every configured agent's skills directory (deduped by shared path) the same way the existing _unregister_extension_skills() fallback scan already does, keeping a name only when a SKILL.md with a matching metadata.source == "extension:<id>" marker is found somewhere - read-only, no directory creation, no symlink escape. Use it instead of re-checking only the toggling agent's own directory when recomputing what remains tracked after narrow stale-mirror cleanup. Add a red-first regression test: Auggie is activated in skills mode first (writing a mirror), then Copilot is activated in skills mode (writing its own mirror for the same names), then Copilot toggles to command mode. Before the fix, registered_skills lost both names entirely even though Auggie's mirrors were untouched on disk; after the fix tracking is preserved and a subsequent full removal correctly cleans up Auggie's remaining mirrors too. Assisted-by: GitHub Copilot (model: Claude Sonnet 5, autonomous) Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix: reject symlinked skills-directory escape in extension skill scans _extension_owned_skill_names() and the fast/fallback paths of its sibling _unregister_extension_skills() called skills_candidate.resolve() and then checked children relative to that already-resolved candidate. If the candidate directory itself (e.g. .gemini/skills) was a symlink pointing outside the project root, both the resolve() call and the subsequent containment check silently passed through the symlink instead of rejecting it: - _extension_owned_skill_names() would falsely attribute ownership to a marker-matching SKILL.md living outside the project. - _unregister_extension_skills()'s fast path (an explicit skills_dir, as passed by the toggle-cleanup call site) and its fallback scan (used during full extension removal) would both shutil.rmtree() the external directory, deleting unrelated content outside the project. Fix by validating the candidate directory itself with the existing _validate_safe_shared_directory() shared-infra helper before any probe or delete: it rejects a symlink at any path component (walking down from the project root, including the final component) without ever resolving through it, and is already used elsewhere in the codebase for the same class of shared-directory containment check. Unsafe candidates are skipped/refused rather than followed. Add red-first security regression tests reproducing each of the three call sites with a `.gemini/skills` symlink pointing at an external directory containing a marker-matching SKILL.md and an unrelated precious_file.txt: provenance inference must not attribute the name, and both the explicit-skills_dir fast path and the None-skills_dir fallback scan must leave the external directory and file untouched. Existing valid shared/deduped directory tests (e.g. agy/amp/codex/zed sharing .agents/skills) continue to pass, confirming legitimate shared directories still clean up correctly. Assisted-by: GitHub Copilot (model: Claude Sonnet 5, autonomous) Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * Fix unscoped extension-skill removal and legacy preset provenance on direct remove - _unregister_extension_skills(): omitting skills_dir now always triggers the full multi-directory fallback scan instead of narrowing to the currently active agent's directory. Previously, remove() (the only caller that omits skills_dir) would resolve the active agent's dir and take the scoped fast path, orphaning a previously-active second agent's extension skill mirror during full removal. - PresetManager.remove(): infer legacy flat-list registered_skills provenance (reusing _infer_legacy_skill_provenance from the prior rescaffold fix) before invoking _unregister_skills, so a direct `preset remove` with no intervening rescaffold/switch also restores every previously-active agent's directory instead of only the currently active one. Added regression tests: - test_remove_while_second_agent_still_in_skills_mode_cleans_up_first_agent_mirror - test_remove_infers_legacy_flat_list_provenance_without_prior_rescaffold Assisted-by: GitHub Copilot (model: Claude Sonnet 5, autonomous) Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * Keep unregister_agent_artifacts scoped to its agent when directory is absent ExtensionManager.unregister_agent_artifacts() converted its resolved agent_skills_dir to None whenever that directory didn't exist, before calling _unregister_extension_skills(). After 1d8f9e3, omitting skills_dir means "genuinely unscoped removal": scan every configured agent's directory, reserved for ExtensionManager.remove()'s full project cleanup. Since unregister_agent_artifacts is agent-scoped (used by switch to clean up the previous integration's artifacts), this caused it to delete every other agent's live extension skill mirrors whenever the target agent's own directory happened to be absent, e.g. unregistering an agent that was never activated. Fix: always pass the explicit, agent-scoped skills_dir, even when it doesn't exist on disk, so the fast path is a safe no-op for an absent directory instead of falling back to the all-agents scan. Registry reconciliation (dropping removed names from the flat registered_skills list) now only runs when the agent's directory actually exists, so an absent directory can't be misread as "these names were removed everywhere" and wipe tracking for mirrors that still legitimately live under other agents' directories. Added regression test: - test_unregister_agent_artifacts_stays_scoped_when_agent_dir_absent Assisted-by: GitHub Copilot (model: Claude Sonnet 5, autonomous) Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * Preserve global skill tracking across agents in unregister_agent_artifacts The present-directory branch of ExtensionManager.unregister_agent_artifacts() recomputed "remaining" registered_skills only by checking whether each name still existed under the just-cleaned agent's own directory. registered_skills is a single flat list shared across every agent an extension was ever activated under (skills are only ever rendered for the currently active agent, so there's no per-agent registry key). Repro: auggie and copilot both have mirrors for the same extension; unregister_agent_artifacts("auggie") correctly removes auggie's own mirror, sees the names absent from auggie's (now empty) directory, and stores an empty registered_skills list - even though copilot's mirror is still live on disk and now untracked. A later full remove() then reads an empty registry and leaves copilot's mirror orphaned. Fix: after the agent-scoped cleanup, recompute remaining names with _extension_owned_skill_names(), which scans every safe, configured agent skills directory (not just the one just cleaned) and keeps a name only if a marker-verified SKILL.md for this extension still exists somewhere. This is the same helper already used for the analogous same-agent toggle-cleanup case, so no new abstraction was introduced. Explicit per-agent cleanup, marker ownership verification, and symlink/containment safety are unchanged. Added regression test: - test_unregister_agent_artifacts_preserves_tracking_for_other_agent_mirror Assisted-by: GitHub Copilot (model: Claude Sonnet 5, autonomous) Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * Reconcile every historical agent on preset removal; validate child skill dirs Fixes 3 findings from the Copilot review on HEAD 31c9b97 (#2948): 1. presets/__init__.py: remove()'s command reconciliation only recreated the surviving preset's content for the currently active agent, even though the removed preset's registered_commands could span multiple historical (now-inactive) agents recorded via prior rescaffolds. Now remove() captures every historical agent registered_commands actually targeted (before mutation) and passes it as extra_agents through _reconcile_composed_commands -> _register_for_non_skill_agents / _register_command_from_path -> registrar.register_commands_for_non_ skill_agents, so the active-only restriction for install/use is preserved while post-removal reconciliation restores every touched directory. 2. presets/__init__.py: the analogous gap existed for skills. _unregister_ skills() now returns {skills_dir: renderer_agent} for every directory it actually restored, and _reconcile_skills() accepts extra_skills_dirs to reconcile each of those directories (via a new apply_to_dir() helper), not only the currently active skills directory. _register_skills() gained optional target_dir/target_agent overrides (forcing create_missing_skills off for non-active directories) so a historical directory is only ever restored, never seeded with brand-new skills. 3. extensions/__init__.py: _extension_owned_skill_names() and both the fast and fallback paths of _unregister_extension_skills() validated only the parent skills_dir for symlink escape, then resolved skills_dir / skill_name and checked containment relative to that already-resolved parent. A per-skill child that is itself a symlink to a different, legitimate skill directory within the same (safe) root passed that containment check, so deleting/attributing through the symlink name could destroy or misattribute an unrelated skill reached only via the alias. All three call sites now run the shared _validate_safe_shared_directory() component-wise check against the full skills_dir / skill_name path (not just the parent) before any read or delete, rejecting a symlinked child outright rather than following it, even when its resolved target remains in-bounds. Regression tests added (all confirmed red against pre-fix code, green after): - test_remove_reconciles_command_for_every_historical_agent - test_remove_reconciles_skill_for_every_historical_agent - test_extension_owned_skill_names_rejects_symlinked_child_skill_dir - test_unregister_extension_skills_explicit_dir_rejects_symlinked_child - test_unregister_extension_skills_fallback_rejects_symlinked_child Tests: tests/test_presets.py (361), tests/test_extension_skills.py (69), tests/test_extensions.py (338) all pass; tests/integrations (1768 passed, 1 skipped) pass; full suite 3902 passed / 74 skipped (90 pre-existing, environment-only git-signing tests deselected — confirmed failing identically on the pre-change baseline due to local 1Password SSH-agent signing, unrelated to this change). ruff check clean on all changed files. Assisted-by: GitHub Copilot (model: Claude Sonnet 5, autonomous) Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * Persist historical reconciliation ownership; defer destructive toggle cleanup; validate registry-provided skill names Round 11 review findings (5 comments on HEAD ab6c28c), three root causes: A) Historical-agent reconciliation wrote surviving content to disk but discarded the returned per-agent write map, so the preset's own registered_commands/registered_skills never learned about directories reconciliation restored on its behalf. A later removal of that same preset then orphaned those directories. Added _merge_pack_registered_commands/_merge_pack_registered_skills and wired them into _reconcile_composed_commands and _reconcile_skills's apply_to_dir so every actual write is merged back into the winning preset's registry metadata. B) Command<->skills toggle on an already-active agent deleted the old artifact before the replacement registration ran, in both presets/__init__.py's register_enabled_presets_for_agent and extensions/__init__.py's register_enabled_extensions_for_agent. If the replacement step raised, both artifacts were lost. Deferred the destructive cleanup until after the replacement phase completes without raising (register-new-then-remove-old ordering); the mirror skills->command direction was already safe since the new command file is always registered unconditionally before any cleanup runs. C) _unregister_skills_in_dir and _infer_legacy_skill_provenance joined a registry-provided (untrusted) skill name directly onto a directory before any name-shape validation. An absolute in-project name discards the intended parent directory entirely (Path's "/" operator drops the left side for an absolute right side), letting a corrupted registry entry escape the intended skills subtree while still resolving inside the project root - passing the existing containment/symlink check. Added a centralized _is_safe_registry_skill_name guard (rejecting non-strings, empty strings, absolute paths, multi-component paths, and "."/".." ) and applied it before every path join derived from registry-provided skill names in both functions. Also fixed _infer_legacy_skill_provenance's unmatched-name fallback, which previously still attributed rejected names to fallback_agent even after the loop skipped them. Added red-first regressions for all three root causes, covering: a two-preset historical-command-agent survivor scenario, an analogous skill-agent survivor scenario, injected skills-phase failure during a preset command->skills toggle and the extension equivalent, a direct unit test of the new name-safety guard, an absolute-path escape attempt against _unregister_skills_in_dir, and a false-attribution attempt against _infer_legacy_skill_provenance. Tests: tests/test_presets.py (367 passed), tests/test_extension_skills.py + tests/test_extensions.py (408 passed), tests/integrations (1768 passed, 1 skipped), full suite tests -q deselecting the pre-existing 1Password-signing-affected tests/extensions/git/test_git_extension.py (3909 passed, 74 skipped, 90 deselected). ruff check clean on all changed files. Assisted-by: GitHub Copilot (model: Claude Sonnet 5, autonomous) Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * Verify replacement actually landed before retiring stale toggle artifacts The command<->skills toggle cleanup added for #2948 deferred destructive removal of the old-mode artifact until after the replacement registration call completed without raising. That was necessary but not sufficient: none of _register_skills(), _register_commands(), register_commands_for_agent(), or _register_extension_skills() raise on a missing source template, a safety-validation skip, or a corrupted manifest entry — they simply return an empty or partial result. Treating "did not raise" as "fully replaced" meant a stale artifact could still be deleted (or its tracking dropped) even though its specific replacement never actually landed, leaving neither artifact in place for that logical command/skill. Fix all four affected toggle directions by checking the replacement call's actual return value before allowing any destructive step: - presets command->skills (register_enabled_presets_for_agent): only unregister a stale command name once its corresponding skill name (via the existing _skill_names_for_command() helper) is confirmed present in the skills call's returned names for that agent; the remainder stays tracked and on disk. - presets skills->command (register_enabled_presets_for_agent): only unregister a stale skill name once its corresponding command name is confirmed present in the commands call's returned names for that agent, using the same helper. - extensions skills->command (register_enabled_extensions_for_agent): only remove a skill mirror once the matching command (mapped via the existing HookExecutor._skill_name_from_command() helper) is confirmed present in register_commands_for_agent's returned names. - extensions command->skills (register_enabled_extensions_for_agent): only remove a deferred stale command once its matching skill name is confirmed present in _register_extension_skills()'s returned names. All four reuse the existing command<->skill name-derivation helpers rather than inventing new mapping logic. Registry tracking is updated to retain exactly the unreplaced subset rather than being popped wholesale, so partially-successful toggles leave correct, minimal tracking behind. Added 8 new regression tests (4 presets, 4 extensions) covering both the fully-empty and genuinely-partial result cases for each of the four toggle directions, using real missing-source-file scenarios (not mocked return values) to exercise the actual code paths. Confirmed red before the fix and green after for all 8. Focused (test_presets.py, test_extension_skills.py, test_extensions.py, tests/integrations): 2551 passed, 1 skipped. Full suite (tests, excluding the pre-existing environment-local 1Password-signing git-extension failures): 3917 passed, 74 skipped, 90 deselected. ruff check: clean. Assisted-by: GitHub Copilot (model: Claude Sonnet 5, autonomous) Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * Retire alias command groups on toggle; scope preset cleanup to switched-away agent (#2948) Fixes three current Copilot review findings on HEAD d0d152e: 1. Command->skills toggle cleanup only matched a stale command's own name against the returned replacement skill name. Aliases (CommandRegistrar tracks and returns primary + alias names flattened into one list) never have their own skill rendered -- only the primary command's skill is rendered -- so an alias's name could never match, leaving its command artifact and tracking behind forever even after the primary's replacement landed. Fixed identically in both presets (register_enabled_presets_for_agent) and extensions (register_enabled_extensions_for_agent): build a primary->alias mapping from the manifest, group stale names by primary, and retire/keep the whole group together based solely on whether the primary's skill replacement actually landed. 2. `integration switch` to a not-yet-installed target unregistered the old agent's extension artifacts but had no preset equivalent, so a preset's command overrides (including custom preset commands) and skill mirrors for the deactivated agent lingered as orphans. Added `PresetManager.unregister_agent_artifacts()`, mirroring `ExtensionManager.unregister_agent_artifacts()`: scoped strictly to the given agent, migrates a legacy flat-list `registered_skills` entry via existing on-disk provenance inference before removing anything (so other agents' real ownership is preserved rather than guessed or dropped), and guards against double-processing an artifact through both the commands and skills paths for native SKILL.md agents. Wired via a new `_unregister_presets_for_agent()` helper into the integration switch command's existing old-agent cleanup phase. Added red-first regression tests: - tests/test_presets.py: alias-group retire/keep/partial-multi-group tests for the command->skills toggle; unregister_agent_artifacts scoping tests for commands and legacy-list skill provenance. - tests/test_extension_skills.py: alias-group retire/keep tests for the extension command->skills toggle. - tests/integrations/test_integration_subcommand.py: end-to-end switch test proving a preset's custom command override is cleaned up when switching to a not-yet-installed integration, with tracking updated correctly and the new agent's registration unaffected. All new tests confirmed red (AttributeError / orphaned file assertions) before the fix and green after. Full suite: 3980 passed, 109 skipped. ruff check clean on all changed files. Assisted-by: GitHub Copilot (model: Claude Sonnet 5, autonomous) Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix: track reconciled extension artifacts Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * Fix native skill preset reconciliation Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * Fix shared native skill cleanup Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * Fix partial preset rescaffold tracking Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * Fix preset agent skill lifecycle Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * Clarify preset removal reconciliation Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix(integrations): address upgrade review feedback Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix(presets): reconcile partial command writes Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix: address active artifact cleanup review Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix: defer preset skill cleanup to winning command Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix: track reconciled and partial preset skills Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix: reconcile project overrides to legacy skills Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix: harden preset skill writes and rollback Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix(presets): harden legacy skill restoration Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix(presets): preserve non-owned legacy skills Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix: validate reconciled skill paths Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix(presets): preserve reconciled skill ownership Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix(presets): clean reconciled agent skills Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix: keep legacy cleanup project-local Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix(presets): keep active agent's artifacts in its current mode on remove A partially failed command<->skills toggle leaves stale tracking (registered_commands or registered_skills) for the active agent, and remove() replayed that history regardless of the agent's current mode: - extra_agents re-admitted the active skills-mode agent into command reconciliation, recreating its command file from a surviving lower preset even though only_agent excluded it. - _unregister_skills restored (and _reconcile_skills reapplied) a skill artifact for the active command-mode agent instead of deleting the preset-owned leftover. The active agent's participation is now decided exclusively by its current mode: reconciliation strips it from extra_agents, and removal routes its stale skills through _delete_agent_preset_skills. Historical replay still applies to inactive agents only (#2948). Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix: filter uninstalled-extension commands in reconciliation; allow active-agent layout change with presets Two follow-ups to the upstream-main merge: - Preset reconciliation (_reconcile_composed_commands) now skips extension-scoped commands (speckit.<ext>.<cmd>) whose extension is not installed, at the single chokepoint every install/remove/rescaffold pass funnels through. Registration already refused them, so reconciliation could materialize files no registry entry tracks. The duplicated per-call-site filters collapse into one _extension_installed_for_command helper. - The #3415 layout-change guard predates this PR's agent-scoped preset rescaffold: for the active integration, _register_presets_for_agent now re-registers enabled presets in the new layout and retires the old layout's stale files, so an active-agent command<->skills toggle proceeds and reconciles instead of being rejected. The guard still rejects non-active agents (no rescaffold runs for them) and still fails closed on an unreadable registry. _installed_presets_affecting_agent also understands the per-agent dict shape of registered_skills this PR writes, instead of raising 'malformed'. Regression tests: rescaffold with an uninstalled extension's command, CLI-level legacy<->skills toggle with an installed preset (both directions), secondary-agent rejection, and dict-shaped registered_skills in the guard helper. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix: reject active layout change while a disabled preset owns artifacts The post-upgrade preset rescaffold iterates enabled presets only, and a disabled preset's artifacts are deliberately frozen until removal, so an active-agent command<->skills layout change cannot reconcile them. _installed_presets_affecting_agent now reports each preset's enabled state and the guard rejects the migration while any affected preset is disabled, with re-enable/remove guidance. Enabled presets and non-active rejection behave as before. Regression test: disabled preset blocks the toggle untouched; re-enabling unblocks it and reconciles. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: replace placeholder prefix in two safety comments Comment-only: spell out why skill deletion is restricted to project-local directories (flat/legacy provenance cannot prove home-directory ownership) instead of an undefined placeholder word. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: correct guard-helper docstring to active-only registration model Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix: fail closed on non-list values in per-agent preset provenance A dict-shaped registered_skills/registered_commands entry with a non-list value (e.g. null) left ownership undecidable but read as "no artifacts", letting a layout-changing upgrade proceed on a malformed registry. Validate values are lists and raise _PresetRegistryUnreadableError otherwise, matching the guard's fail-closed contract. Unit test covers both fields. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix: drop eager extension unregister on layout-changing upgrade Unregistering the agent's extension artifacts before re-registration deleted files and registry tracking up front, so a failed or partial re-registration left the extension with no artifacts at all. Retirement of each opposite-mode artifact already belongs to register_enabled_extensions_for_agent's deferred toggle cleanup, which removes an old artifact only after its replacement is confirmed. Also keeps disabled extensions consistent with disabled presets: artifacts stay frozen in place with intact tracking. Regression test corrupts the installed extension manifest so re-registration fails, then asserts the old-layout artifacts and their registry tracking survive the upgrade. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix: rescaffold fallback integration after failed switch rollback When Phase 2 of a switch fails, rollback restores another installed integration as the default via _set_default_integration but never re-registered extensions or presets for it. Under active-only registration the fallback may never have received any artifacts (it was installed while another integration was active), and Phase 1 already unregistered the outgoing agent's artifacts — leaving the restored default unusable. Rescaffold both extensions and presets (best-effort) after the fallback default is successfully restored. Regression test: secondary codex install with the git extension, a failing switch to generic, then asserts codex ends up with registered extension artifacts after rollback. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: explain load-bearing pre-create loop in _reconcile_skills The per-skill _validate_skill_subdir(create=True) loop looks like dead code (its result is unused), but it re-creates the tracked skill subdirectories that _unregister_skills just deleted so _register_skills's only-overwrite-existing gate passes during a historical-directory restore. Removing it fails test_skill_reconciliation_preserves_per_directory_names. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix: preserve dashed-description skill tracking Use the shared frontmatter parser when verifying surviving extension skill mirrors so delimiter substrings cannot hide provenance metadata. Assisted-by: GitHub Copilot (model: GPT-5.6 Sol, autonomous) Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix: skip absent extension skills during reconciliation Filter extension-scoped commands before skill reconciliation so historical preset tracking and project overrides cannot recreate artifacts for uninstalled extensions. Assisted-by: GitHub Copilot (model: GPT-5.6 Sol, autonomous) Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix: preserve partial native skill cleanup Coordinate native-skill command cleanup with registered skill coverage per agent and command so partial rescaffolds cannot orphan preset artifacts. Assisted-by: GitHub Copilot (model: GPT-5.6 Sol, autonomous) Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> --------- Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> |
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3ca0eb169e |
Add Intake Sequencing Governance preset to community catalog (#3761)
Add intake-sequencing-governance preset submitted by @hindermath to: - presets/catalog.community.json (alphabetical order) - docs/community/presets.md community presets table Closes #3742 Assisted-by: GitHub Copilot (model: claude-sonnet-4.6, autonomous) Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> |