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github-actions[bot] fa19e1c68b [bug-fix] Fix qodercli-skills-migration: migrate QodercliIntegration to SkillsIntegration (#4205) 
* Fix qodercli-skills-migration: migrate QodercliIntegration to SkillsIntegration

Apply the remediation from the bug assessment on issue #4199.
Qoder IDE 1.24+ dropped .qoder/commands/ scanning in favour of the
skills layout (.qoder/skills/{skill-name}/SKILL.md). Migrated
QodercliIntegration from MarkdownIntegration to SkillsIntegration,
updating config[commands_subdir] to 'skills' and
registrar_config[dir] to '.qoder/skills' with extension '/SKILL.md'.
Updated tests to use SkillsIntegrationTests base mixin.

Refs #4199

Assisted-by: GitHub Copilot (model: claude-sonnet-4.6, autonomous)
Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* fix(qodercli): resolve failing skills-flag test and slash invocation

Builds on the qodercli->SkillsIntegration migration (PR #4205). Qoder IDE
1.24+ is always skills-based, so it should not expose a --skills toggle.
Override the inherited SkillsIntegrationTests.test_options_include_skills_flag
to skip (mirroring Grok/Zed/Droid) and add a test asserting no --skills
option, plus a requires_cli/name/multi_install_safe check.

Also add "qodercli" to ALWAYS_SLASH_AGENTS so hooks and next-steps render
the hyphenated /speckit-<name> invocation instead of the legacy dotted
/speckit.<name> form.

Fixes the single failing test reported for #4199.

Assisted-by: GitHub Copilot (model: claude-opus-4.8, autonomous)
Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com>
Copilot-Session: 43394151-ce2a-432d-9cc5-88f587d1b570

* fix(qodercli): migrate legacy extension commands

Retire old flat Qoder extension commands only after their replacement skills are successfully written. Cover old-layout upgrades and both slash invocation states, and update the integration reference path.

Assisted-by: GitHub Copilot (model: GPT-5.6 Sol, autonomous)

Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com>

---------

Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>
Co-authored-by: Manfred Riem <15701806+mnriem@users.noreply.github.com>
Copilot-Session: 43394151-ce2a-432d-9cc5-88f587d1b570
 2026-08-20 11:03:23 -05:00
Ángel Peña 6aa9431b24 Add Command Code integration to spec-kit (#4019) 
* Add Command Code integration to spec-kit

Adds `command-code` as a built-in skills-based integration so Spec Kit can
be installed into Command Code. Command Code loads agent skills from
`.commandcode/skills/speckit-<name>/SKILL.md` and invokes them in chat as
`$speckit-<command>`.

- New `CommandCodeIntegration` (SkillsIntegration) writing to
  `.commandcode/skills/`; declared multi-install safe (static, isolated
  agent root).
- Register in `_register_builtins()` and the integration catalog.
- Add `command-code` to `DOLLAR_SKILLS_AGENTS` so next-steps guidance
  renders `$speckit-*` invocations.
- Tests: reuse `SkillsIntegrationTests` mixin plus a dollar-invocation
  next-steps test; registry completeness updated.
- Docs: README and docs/reference/integrations.md (supported agents +
  multi-install-safe table).

Co-authored-by: CommandCodeBot <noreply@commandcode.ai>
Assisted-by: Command Code (autonomous)

* Fix issue template agent lists to include command-code

The runtime AGENT_CONFIG now includes command-code, but the GitHub issue
templates and the consistency test's expected key list were not updated,
failing test_issue_template_agent_lists_match_runtime_integrations.

Co-authored-by: CommandCodeBot <noreply@commandcode.ai>
Assisted-by: Command Code (autonomous)

---------

Co-authored-by: CommandCodeBot <noreply@commandcode.ai>
 2026-08-10 14:44:20 -05:00
Manfred Riem 0fbd99d594 feat(copilot): default integration to skills (#3976) 
* feat(copilot): default integration to skills

Make Copilot skills the default while retaining the commands layout behind --integration-options="--commands". Preserve historical project layouts and validate conflicting mode flags before switch teardown.

Assisted-by: GitHub Copilot (model: GPT-5.6 Sol, autonomous)

Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com>

Copilot-Session: 930d846b-8921-44ef-9f45-3e77c036b6b5

* fix(copilot): preserve layout state during migration

Keep target integration options isolated from fallback state, prefer the Copilot manifest when resolving layouts, and update dispatch coverage for the skills-first default.

Assisted-by: GitHub Copilot (model: GPT-5.6 Sol, autonomous)

Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com>

Copilot-Session: 930d846b-8921-44ef-9f45-3e77c036b6b5

---------

Copilot-Session: 930d846b-8921-44ef-9f45-3e77c036b6b5
 2026-08-04 06:15:40 -05:00
Eric X Engstfeld 7fc5b236c8 feat: Add Alquimia AI integration (#2734) 
* Add alquimia-ai as new integration: https://alquimia.ai

* Fix test cases for alquimia-ai integration. Add alquimia-ai to workflow.yml

* Add install url to alquimia-ai integration

* Renamed alquimia-ai to alquimia (cli native denomination)

* Fix unit tests for alquimia integration

* Minor fix in alquimia integration

* Fix typos and copilot findings

* Potential fix for pull request finding

Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>

* Potential fix for pull request finding

Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>

* Update tests cases and lint formatting

* Final fixes

* Rename alquimia_ai to alquimia module integration

* Make cli optional for alquimiia integration

* resolve review comments

* Fix copilot review

* Minor fixes: naming, remove unused code

* Update tests cases. Fix issues

* Fix unit tests

* Add alquimia context to default agent-context extension. Update cli requirment to support workflows

* Fix hints (suggestion)

* Add Alquimia AI as agent in github issue template. Fix unit tests

* Address review comments. Update docs

* Update test cases

---------

Co-authored-by: Eric Engstfeld <ericengstfeld@Erics-MacBook-Pro.local>
Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>
 2026-07-28 07:54:13 -05:00
Marsel Safin 683bfd00c9 fix: register extensions for the active integration only (#3459) 
* fix: register extensions for the active integration only

extension add registered commands for every detected agent, and
integration upgrade back-filled enabled extensions for non-active
integrations. Maintainer direction on #2948: treat the project as
single-active. Only the active integration gets extension artifacts;
use/switch rescaffold the target when the user selects it.

- extension add now routes through the all-agents pass restricted to
  the active integration (only_agent), keeping detection and
  missing-skills-dir recovery safeguards. Projects without recorded
  init-options fall back to detection-based registration.
- integration upgrade re-registers extensions only when upgrading the
  active integration, reversing the #2886 back-fill for non-active
  targets at maintainer request.

Fixes #2948

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* fix: address review feedback on active-only extension registration

- Restrict the extension-add active-integration fallback to projects
  with no recorded active key at all. A recorded but unsupported key
  (e.g. "generic", deliberately excluded from AGENT_CONFIGS) no longer
  falls back to registering every detected agent.
- Apply the same single-active rule to preset command overrides:
  PresetManager._register_commands now scopes registration to the
  active integration via only_agent.
- Add PresetManager.register_enabled_presets_for_agent, mirroring
  ExtensionManager.register_enabled_extensions_for_agent, and call it
  from integration use/switch/upgrade (active only) alongside the
  existing extension re-registration so presets are rescaffolded on
  activation instead of being written for inactive integrations.

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* fix: address second round of review feedback (priority order, fail-closed, docs)

- register_enabled_presets_for_agent now processes presets in reverse
  priority order (lowest-precedence first) so the highest-precedence
  preset is written last and actually wins after `integration use`
  rescaffolds two overlapping preset command overrides. Verified this
  reproduces the previously reported reversed-priority bug and that the
  fix resolves it.
- _register_commands_for_active_agent now checks for the "ai" key's
  presence separately from its value: a missing key still falls back to
  detection-based registration for all agents, but a recorded, malformed
  value (non-string or empty, e.g. [] or null) now fails closed
  (registers nothing) instead of being treated as "no active
  integration" or reaching AGENT_CONFIGS.get() with an unhashable key
  and raising TypeError.
- Updated docs/reference/presets.md and docs/reference/integrations.md
  to describe active-only preset/extension registration and clarify
  that `integration use`/`switch` is the activation point for
  installed extensions and presets, and that `upgrade` only
  re-registers them for the active integration.

Adds regression tests: two enabled presets overriding the same command
with different priorities (priority winner must survive `use`
rescaffolding), and a malformed recorded `ai` value ([]) for
`extension add`.

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* fix: address third round of review feedback (multi-integration semantics)

Fixes five deeper active-only registration bugs surfaced by Copilot review
after 2486c08, all in the presets/extensions single-active integration
rule (#2948):

1. presets: _reconcile_composed_commands (run after install/remove)
   bypassed the active-only filter entirely, writing composition-winner
   command files for every detected non-skill agent via
   register_commands_for_non_skill_agents. Added an only_agent param to
   that registrar method (mirroring register_commands_for_all_agents)
   and threaded it through all 5 reconciliation call sites.

2. presets: `integration use copilot` with --skills (ai_skills: true)
   wrote both the static .agent.md command file AND the SKILL.md
   mirror for the same override. Mirrored the extension path's
   ai_skills guard in both _register_commands and the reconciliation
   pass: a command-backed active agent running in skills mode is
   excluded from non-skill command registration.

3. presets: registered_skills was a flat list, so switching between
   two skill-mode agents (e.g. Claude -> Codex) and then removing the
   preset only restored the currently active agent's directory,
   permanently orphaning the other. _unregister_skills now restores
   every existing skill-mode agent directory instead of only the
   active one.

4. extensions: load_init_options() collapses "no file" and "corrupted
   file" into the same {}, so the round-2 fail-closed fix didn't
   actually distinguish them. Added a shared
   resolve_active_agent_for_registration() helper in _init_options.py
   that checks file existence separately from parse success, returning
   a distinct sentinel for "file absent" vs None for "corrupted or
   invalid". extensions/__init__.py now uses this helper.

5. presets: same corruption-collapsing bug in _register_commands's
   active_agent resolution. Now uses the same shared helper as (4).

Adds regression tests for all five: reconciliation active-only
filtering, copilot --skills dual-write prevention, multi-skill-agent
switch+remove, and corrupted init-options fail-closed behavior for
both extension add and preset add. Each test was verified to fail
against the pre-fix code and pass with the fix.

Targeted (883) and full (3923 passed, 109 skipped) suites pass; ruff
check clean.

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* fix: address fourth round of review feedback (skill registration provenance)

Replace the "enumerate every skill-mode directory and restore all of them"
approach from the previous round with precise per-agent provenance
tracking, per reviewer feedback that the enumerate-and-restore-everything
design was unsound:

- registered_skills changes from a flat List[str] to Dict[str, List[str]]
  (agent name -> skill names actually written), mirroring the shape
  registered_commands already uses. _register_skills now returns this
  per-agent mapping instead of a bare list, and every call site
  (register_enabled_presets_for_agent, install_from_directory, the
  _reconcile_skills "was this skill previously managed" check) is updated
  to read/merge the new shape. Legacy flat-list registry entries from
  before this change are still readable: writes self-migrate the format,
  and _normalize_registered_skills() handles the transitional read paths.

- _unregister_skills now restores exactly the agent directories recorded
  for a preset instead of guessing at every skill-mode integration that
  happens to exist on disk. This fixes two problems with the old
  enumerate-everything design: (1) it could silently overwrite or delete
  another preset's (or a user's) override in an agent directory the
  current preset never actually touched, and (2) it depended on
  transient per-process integration state (_skills_mode), which is unset
  in a fresh CLI invocation for mode-selectable integrations like Copilot
  --skills, permanently orphaning their overrides after a process
  restart. Registries written before this change (flat list, no agent
  provenance) fall back to best-effort restoration under only the
  currently active agent, matching the pre-existing guarantee level.

- Every directory resolved from persisted provenance is now validated
  through the project's shared symlink/containment guard
  (_ensure_safe_shared_directory) before any file in it is read, written,
  or removed, since restoration may target an agent that isn't currently
  active and its directory can't be assumed safe just because a name was
  recorded for it.

- _tracked_skill_agent_dirs() (the enumeration helper introduced last
  round) is removed; it's superseded by the provenance-based design.

Adds regression tests: a symlinked skills directory is rejected during
removal; removing one preset does not disturb a different preset's
override in another agent's directory; and a Copilot --skills
registration installed, then removed after switching agents in a fresh
PresetManager instance (simulating a new process), is still correctly
restored. Updates existing skill-registration assertions across
test_presets.py and test_integration_claude.py for the new per-agent
registry shape.

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* fix: address fifth round of review feedback (symlink presence, rescaffold reconciliation, shared skills dir)

- _init_options.py: resolve_active_agent_for_registration() now treats a
  dangling init-options.json symlink as present (path.is_symlink() check
  alongside path.exists()), since Path.exists() follows symlinks and
  returns False for a broken one. Previously a broken symlink fell back
  to the legacy "no file" path and registered every detected agent
  instead of failing closed.
- presets/__init__.py (register_enabled_presets_for_agent): the
  integration use/switch rescaffold path now collects affected command
  names across all presets processed and runs
  _reconcile_composed_commands/_reconcile_skills once after the loop,
  matching install/remove. Previously rescaffolding wrote each preset's
  raw content directly with no follow-up reconciliation, so a
  project-level override (the highest-priority layer) could be clobbered
  by a lower-precedence preset after switching agents.
- presets/__init__.py (_unregister_skills): multiple integrations can
  share one physical skills directory (agy/codex/zed all resolve to
  .agents/skills). Provenance restoration now groups recorded agent
  entries by resolved directory and restores each physical directory
  exactly once, preferring the currently active agent's renderer when it
  owns that directory (otherwise any recorded owner, chosen
  deterministically). Previously each recorded agent key triggered its
  own restore pass against the same directory, with whichever agent was
  iterated last silently winning regardless of which agent was active.

Adds regression tests for each: a dangling init-options.json symlink
failing closed for both preset resolution and extension add; integration
use rescaffold preserving a project override over a lower-priority
preset; and a codex/agy shared-directory removal restoring the directory
exactly once in the active agent's format.

Targeted (tests/integrations/test_integration_subcommand.py,
tests/test_presets.py, tests/test_extensions.py,
tests/test_extension_skills.py,
tests/integrations/test_integration_opencode.py,
tests/integrations/test_integration_claude.py): 930 passed.
Full suite: 3930 passed, 109 skipped.
ruff check: clean on files touched by this change.

Refs #2948

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* fix: guard skill subdirectories and active-agent scoping in preset reconciliation

Fix 4 issues from round-6 review of the active-only integration
registration work (#2948):

- remove(): removed_cmd_names only collected primary command names from
  registered_commands + manifest aliases, missing commands that were
  only ever registered via skills mode (ai_skills guard returns no
  command names for command-backed integrations in skills mode). This
  skipped reconciliation entirely when removing a higher-priority
  skills-mode preset, causing _unregister_skills() to fall back to
  core/extension content instead of the surviving lower-priority
  preset's override. Now every command template's primary name is
  added to removed_cmd_names unconditionally.

- _reconcile_composed_commands(): the "composed is None" branch (fires
  when no replace-strategy layer remains for a command, e.g. after
  removing a wrap/append preset's base) called unregister_commands()
  across every configured non-skill agent, ignoring only_agent. This
  deleted historical artifacts from integrations that were never active
  for the preset. Now filtered by only_agent like the rest of the file.

- Added _validate_skill_subdir() helper (reusing
  _ensure_safe_shared_directory/_validate_safe_shared_directory from
  shared_infra.py) and applied it at every site that reads or writes an
  individual skill subdirectory (_register_skills,
  _unregister_skills_in_dir, _reconcile_skills' override_skills
  restoration loop). _safe_skills_dir_for_agent only validated the
  parent skills directory; a symlinked leaf subdirectory (e.g.
  .claude/skills/speckit-specify) would slip past that check since
  is_dir()/exists() follow symlinks, letting write_text/rmtree operate
  through it to an arbitrary location outside the project.

Added regression tests: removing a higher-priority skills-only preset
restores the surviving lower-priority preset's content; composed-is-None
unregistration only touches the active agent; symlinked skill subdirectory
rejected on restore; symlinked skill subdirectory rejected on write.

Targeted (934) and full (3934 passed, 109 skipped) test suites and ruff
check pass clean.

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* fix: persist command registration before fallible skills phase on rescaffold

Fix remaining round-6 review findings on the active-only integration
registration work (#2948):

- register_enabled_presets_for_agent(): registered_commands and
  registered_skills were merged and persisted together in a single
  registry.update() call after both the commands and skills phases ran.
  If _register_skills() raised, the per-preset try/except swallowed it
  before that update() call was reached, even though _register_commands()
  had already written a real command file to disk. That file became
  untracked, so preset removal could no longer clean it up.
  install_from_directory() already persists registered_commands
  immediately after the commands phase, before starting the independently
  fallible skills phase; rescaffold now does the same.

- test_presets.py: renamed a misleading claude_dir variable (pointing at
  Gemini's command directory) in
  test_composed_none_unregister_respects_active_agent to reuse the
  existing gemini_commands_dir variable already defined earlier in the
  same test.

Added regression test
test_rescaffold_persists_commands_before_fallible_skills_phase:
simulates a skills-phase failure during rescaffold and asserts the
command file already written to disk is still tracked in
registered_commands.

Verified all other round-6 findings (preset active-integration scoping,
preset reconciliation/remove paths, skills-mode switching, override
precedence during rescaffold, skill-subdirectory symlink safety) are
already addressed by prior commits in this branch; re-checked each
against current code before concluding no further change was needed.

Targeted (tests/test_presets.py, tests/test_extensions.py: 689 passed)
and full (3935 passed, 109 skipped) suites and ruff check on changed
files pass clean.

Assisted-by: GitHub Copilot (model: Claude Sonnet 5, autonomous)
Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* fix: unregister stale opposite-mode preset artifact on same-agent skills toggle

Fix an Important gap in register_enabled_presets_for_agent() surfaced by
quality review (#2948): toggling ai_skills for the *same already-active*
command-backed agent (e.g. `integration upgrade copilot` after flipping
ai_skills, with copilot staying active throughout) left a stale artifact
from the previous mode behind, violating the command/skill mutual-
exclusion invariant this PR otherwise enforces.

- command -> skills: _register_commands()'s ai_skills guard makes the
  commands phase a no-op, but the previously-written command file (e.g.
  .agent.md) and its registered_commands[agent] entry were never cleaned
  up, so it lingered alongside the newly written SKILL.md.
- skills -> command: _get_skills_dir() stops resolving a skills directory
  once ai_skills is off, making the skills phase a no-op, but the
  previously-written SKILL.md and its registered_skills[agent] entry were
  never cleaned up, so it lingered alongside the newly (re)written command
  file.

register_enabled_presets_for_agent() now resolves once per call whether
agent_name is a command-backed integration (extension != "/SKILL.md") and
the current ai_skills state, then narrowly unregisters the stale opposite-
mode entry for that agent via the existing _unregister_commands /
_unregister_skills helpers before persisting updated tracking — mirroring
the same per-agent, per-preset isolation already used elsewhere in this
method. Native skill-only agents (claude, codex, ...) are unaffected:
they have no command/skill toggle, so registered_commands and
registered_skills legitimately co-exist for them by design. The trailing
reconciliation pass, project-override precedence, and per-preset
partial-failure isolation are all unchanged.

Added red-first regression tests exercising the real install +
register_enabled_presets_for_agent rescaffold path in both toggle
directions:
- test_rescaffold_toggle_command_to_skills_removes_stale_command_file
- test_rescaffold_toggle_skills_to_command_removes_stale_skill_file

Both failed against the prior code (stale artifact persisted / registry
still tracked it) and pass after the fix.

Targeted (tests/test_presets.py, tests/test_extensions.py: 691 passed)
and full (3937 passed, 109 skipped) suites and ruff check on changed
files pass clean.

Assisted-by: GitHub Copilot (model: Claude Sonnet 5, autonomous)
Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* fix: migrate legacy flat-list registered_skills on rescaffold even when unchanged

Fix a valid finding from GitHub Copilot's review of HEAD b9d9053 (#2948):
register_enabled_presets_for_agent() normalizes a legacy flat-list
registered_skills value (predating per-agent provenance) to the
{agent_name: [...]} dict shape in memory via _normalize_registered_skills,
but the persistence check only compared the two *normalized* forms. When
the freshly rescaffolded skill names are identical to what the legacy
list already held — the common case, since nothing about the preset or
skill actually changed — that comparison is a no-op and registry.update()
is skipped, leaving the *raw* on-disk value as the un-migrated flat list.

A later switch to a different skill-mode agent and removal then follows
_unregister_skills's legacy best-effort path (restore only the currently
active agent's directory) instead of the per-agent provenance path,
permanently orphaning the first agent's override.

Fix: track the raw (pre-normalization) existing value and force
persistence whenever it's a non-empty list, independent of whether the
normalized content changed. Traced registered_commands for the same
class of bug: its registry value has always been Dict[str, List[str]]
(no legacy flat-list format ever existed for it — the existing
`if not isinstance(existing_commands, dict): existing_commands = {}`
guard is not a lossy migration path), so this fix stays scoped to
registered_skills only.

Added red-first regression test
test_rescaffold_migrates_legacy_flat_list_registered_skills: installs a
preset, overwrites its registry entry with a raw legacy flat list,
rescaffolds the *same* active agent with unchanged skill names, and
asserts the raw registry is migrated to per-agent dict form. Extends the
scenario with a switch to a second skill-mode agent and preset removal
to prove both agents' directories restore cleanly instead of orphaning
the first. Failed against the prior code (raw value stayed a list) and
passes after the fix.

Targeted (tests/test_presets.py, tests/test_extensions.py: 692 passed)
and full (3938 passed, 109 skipped) suites and ruff check on changed
files pass clean.

Assisted-by: GitHub Copilot (model: Claude Sonnet 5, autonomous)
Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* fix: reconcile before fallible skills phase, infer legacy skill provenance, and unregister stale extension artifacts on toggle

Three findings from the Copilot review on HEAD b9d9053/3a1e749:

1. `register_enabled_presets_for_agent()` only recorded a preset's command
   names into `affected_cmd_names` (the set later passed to
   `_reconcile_composed_commands`/`_reconcile_skills`) in the loop that ran
   *after* `_register_skills()`, inside the same per-preset `try` block. If
   `_register_skills` raised, the `except` caught it and `continue`d before
   that loop ever ran — so a preset whose commands phase already wrote real
   content to disk never got reconciled against the full priority stack,
   leaving its raw content in place instead of a project override or
   higher-precedence preset's content. Fix: record the manifest's command
   names immediately after the commands phase succeeds and persists, before
   calling the independently fallible `_register_skills()`.

2. The legacy flat-list `registered_skills` migration (added for the
   previous review round) attributed every name in the list to whichever
   agent was currently being (re)activated. If the first operation after
   upgrading from a pre-#2948 registry was a direct switch to a *different*
   skill-mode agent (e.g. a legacy Claude override, then `integration use
   codex` with no intervening Claude rescaffold), the migrated dict only
   recorded `{"codex": [...]}`, permanently losing Claude's actual
   provenance and orphaning its override on later removal. Fix: added
   `_infer_legacy_skill_provenance()`, which probes every configured
   skill-mode agent's directory (via the same safe, symlink-validated
   helpers already used for restore/removal) for a `SKILL.md` whose
   frontmatter records this exact preset as the owner
   (`metadata.source == "preset:<pack_id>"`). A name found under more than
   one directory is attributed to every matching agent (the preset may have
   been active while the user switched between several skill-mode agents
   before provenance tracking existed); names that can't be matched to any
   directory still fall back to the previously-active best-effort
   behaviour. Directory grouping for shared-path aliases (e.g.
   agy/codex/zed all resolving to `.agents/skills`) intentionally does not
   call `.resolve()` on the path, since doing so diverges from
   `project_root`'s own resolution state on platforms where a path
   component is itself a symlink (e.g. macOS's `/var` -> `/private/var`)
   and made every subsequent containment check spuriously fail.

3. `register_enabled_extensions_for_agent()` has the same command/skill
   mutual-exclusion gap the preset path had (fixed in a previous round):
   toggling `ai_skills` for the *same active* agent left the opposite
   mode's artifact behind. Command -> skills left the extension's
   `.agent.md` file and its `registered_commands[agent]` entry in place
   once `skills_mode_active` made the commands phase a no-op. Skills ->
   command left the extension's `SKILL.md` file in place, since an empty
   `_register_extension_skills()` result (because this agent's skills
   directory no longer resolves once `ai_skills` is off) was treated as
   "nothing to register" rather than "this was rendered here before and is
   now stale". This diverges from the preset path in one respect:
   `registered_skills` for extensions has always been a flat list with no
   per-agent provenance (extension skills are only ever rendered for the
   active agent, never per-preset-per-agent tracked), so the fix resolves
   ownership by checking which of the extension's tracked skill names
   still exist as directories under this specific agent's directory before
   removing them — mirroring the same technique `unregister_agent_artifacts`
   already uses for full agent deactivation, but scoped narrowly to firing
   only when a toggle is actually detected (`skills_mode_active` /
   `command_mode_active`), so a same-mode re-run never disturbs
   already-correct artifacts or a user's manual customizations.

Regression tests (all confirmed red before their respective fix, green
after):
- tests/test_presets.py::TestPresetSkills::test_rescaffold_reconciles_override_even_when_skills_phase_fails
- tests/test_presets.py::TestPresetSkills::test_rescaffold_legacy_flat_list_direct_switch_preserves_original_agent
- tests/test_extension_skills.py::TestExtensionSkillRegistration::test_rescaffold_toggle_command_to_skills_removes_stale_extension_command_file
- tests/test_extension_skills.py::TestExtensionSkillRegistration::test_rescaffold_toggle_skills_to_command_removes_stale_extension_skill_file

Verification: tests/test_presets.py + tests/test_extensions.py +
tests/test_extension_skills.py (753 passed), tests/integrations/ (1768
passed, 1 skipped), full suite `pytest tests -q` (3942 passed, 109
skipped), `ruff check` on changed files clean.

Assisted-by: GitHub Copilot (model: Claude Sonnet 5, autonomous)
Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* fix: broaden legacy skill provenance inference to command-backed agents

_infer_legacy_skill_provenance() only probed agents whose registrar
config statically declares extension == "/SKILL.md", excluding
command-backed agents (e.g. Copilot) that can also render preset
overrides as SKILL.md files when ai_skills is enabled. A real
preset-owned .github/skills/.../SKILL.md written while Copilot was the
active skills-mode agent was therefore never probed and got
misattributed entirely to whichever agent activated first after the
upgrade, permanently orphaning Copilot's override on later removal.

Broaden the candidate set to every configured integration
(CommandRegistrar.AGENT_CONFIGS), reusing the existing safe-path
helper (_safe_skills_dir_for_agent, itself built on the shared
_get_skills_dir resolver) rather than inventing new path-construction
logic. The existing preset-marker match (metadata.source ==
"preset:<pack_id>") continues to gate every attribution, so
command-mode agents that never rendered this preset's skill are not
falsely attributed.

Add red-first regression tests: a legacy flat-list entry owned by
Copilot in skills mode, switched directly to Claude with no
intervening Copilot rescaffold, now migrates to a per-agent dict
covering both agents, and removal restores both agents' files instead
of orphaning Copilot's override; plus a negative-case test confirming
a command-mode Copilot with no preset-owned skill marker is not
falsely attributed during the same migration.

Assisted-by: GitHub Copilot (model: Claude Sonnet 5, autonomous)
Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* fix: preserve extension skill tracking for mirrors in other agent dirs

The skills -> command toggle cleanup in
register_enabled_extensions_for_agent() recomputed the remaining
tracked registered_skills names by checking only the toggling agent's
own skills directory. Since registered_skills is a single flat list
shared across every agent an extension has ever been activated under
(skills are only ever rendered for the active agent, so there is no
per-agent registry key), a name whose mirror still existed under a
*different*, previously-active agent's directory was incorrectly
dropped from tracking as soon as the current agent's own copy was
removed. A later full removal only iterates registered_skills, so the
orphaned mirror under the other agent's directory was never found or
cleaned up.

Add _extension_owned_skill_names(), which re-verifies ownership across
every configured agent's skills directory (deduped by shared path) the
same way the existing _unregister_extension_skills() fallback scan
already does, keeping a name only when a SKILL.md with a matching
metadata.source == "extension:<id>" marker is found somewhere -
read-only, no directory creation, no symlink escape. Use it instead of
re-checking only the toggling agent's own directory when recomputing
what remains tracked after narrow stale-mirror cleanup.

Add a red-first regression test: Auggie is activated in skills mode
first (writing a mirror), then Copilot is activated in skills mode
(writing its own mirror for the same names), then Copilot toggles to
command mode. Before the fix, registered_skills lost both names
entirely even though Auggie's mirrors were untouched on disk; after
the fix tracking is preserved and a subsequent full removal correctly
cleans up Auggie's remaining mirrors too.

Assisted-by: GitHub Copilot (model: Claude Sonnet 5, autonomous)
Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* fix: reject symlinked skills-directory escape in extension skill scans

_extension_owned_skill_names() and the fast/fallback paths of its
sibling _unregister_extension_skills() called skills_candidate.resolve()
and then checked children relative to that already-resolved candidate.
If the candidate directory itself (e.g. .gemini/skills) was a symlink
pointing outside the project root, both the resolve() call and the
subsequent containment check silently passed through the symlink
instead of rejecting it:

- _extension_owned_skill_names() would falsely attribute ownership to
  a marker-matching SKILL.md living outside the project.
- _unregister_extension_skills()'s fast path (an explicit skills_dir,
  as passed by the toggle-cleanup call site) and its fallback scan
  (used during full extension removal) would both shutil.rmtree() the
  external directory, deleting unrelated content outside the project.

Fix by validating the candidate directory itself with the existing
_validate_safe_shared_directory() shared-infra helper before any probe
or delete: it rejects a symlink at any path component (walking down
from the project root, including the final component) without ever
resolving through it, and is already used elsewhere in the codebase for
the same class of shared-directory containment check. Unsafe
candidates are skipped/refused rather than followed.

Add red-first security regression tests reproducing each of the three
call sites with a `.gemini/skills` symlink pointing at an external
directory containing a marker-matching SKILL.md and an unrelated
precious_file.txt: provenance inference must not attribute the name,
and both the explicit-skills_dir fast path and the None-skills_dir
fallback scan must leave the external directory and file untouched.
Existing valid shared/deduped directory tests (e.g. agy/amp/codex/zed
sharing .agents/skills) continue to pass, confirming legitimate shared
directories still clean up correctly.

Assisted-by: GitHub Copilot (model: Claude Sonnet 5, autonomous)
Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* Fix unscoped extension-skill removal and legacy preset provenance on direct remove

- _unregister_extension_skills(): omitting skills_dir now always triggers
  the full multi-directory fallback scan instead of narrowing to the
  currently active agent's directory. Previously, remove() (the only
  caller that omits skills_dir) would resolve the active agent's dir and
  take the scoped fast path, orphaning a previously-active second agent's
  extension skill mirror during full removal.

- PresetManager.remove(): infer legacy flat-list registered_skills
  provenance (reusing _infer_legacy_skill_provenance from the prior
  rescaffold fix) before invoking _unregister_skills, so a direct
  `preset remove` with no intervening rescaffold/switch also restores
  every previously-active agent's directory instead of only the
  currently active one.

Added regression tests:
- test_remove_while_second_agent_still_in_skills_mode_cleans_up_first_agent_mirror
- test_remove_infers_legacy_flat_list_provenance_without_prior_rescaffold

Assisted-by: GitHub Copilot (model: Claude Sonnet 5, autonomous)
Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* Keep unregister_agent_artifacts scoped to its agent when directory is absent

ExtensionManager.unregister_agent_artifacts() converted its resolved
agent_skills_dir to None whenever that directory didn't exist, before
calling _unregister_extension_skills(). After 1d8f9e3, omitting
skills_dir means "genuinely unscoped removal": scan every configured
agent's directory, reserved for ExtensionManager.remove()'s full
project cleanup. Since unregister_agent_artifacts is agent-scoped (used
by switch to clean up the previous integration's artifacts), this
caused it to delete every other agent's live extension skill mirrors
whenever the target agent's own directory happened to be absent, e.g.
unregistering an agent that was never activated.

Fix: always pass the explicit, agent-scoped skills_dir, even when it
doesn't exist on disk, so the fast path is a safe no-op for an absent
directory instead of falling back to the all-agents scan. Registry
reconciliation (dropping removed names from the flat registered_skills
list) now only runs when the agent's directory actually exists, so an
absent directory can't be misread as "these names were removed
everywhere" and wipe tracking for mirrors that still legitimately live
under other agents' directories.

Added regression test:
- test_unregister_agent_artifacts_stays_scoped_when_agent_dir_absent

Assisted-by: GitHub Copilot (model: Claude Sonnet 5, autonomous)
Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* Preserve global skill tracking across agents in unregister_agent_artifacts

The present-directory branch of ExtensionManager.unregister_agent_artifacts()
recomputed "remaining" registered_skills only by checking whether each name
still existed under the just-cleaned agent's own directory. registered_skills
is a single flat list shared across every agent an extension was ever
activated under (skills are only ever rendered for the currently active
agent, so there's no per-agent registry key). Repro: auggie and copilot both
have mirrors for the same extension; unregister_agent_artifacts("auggie")
correctly removes auggie's own mirror, sees the names absent from auggie's
(now empty) directory, and stores an empty registered_skills list - even
though copilot's mirror is still live on disk and now untracked. A later full
remove() then reads an empty registry and leaves copilot's mirror orphaned.

Fix: after the agent-scoped cleanup, recompute remaining names with
_extension_owned_skill_names(), which scans every safe, configured agent
skills directory (not just the one just cleaned) and keeps a name only if a
marker-verified SKILL.md for this extension still exists somewhere. This is
the same helper already used for the analogous same-agent toggle-cleanup
case, so no new abstraction was introduced. Explicit per-agent cleanup,
marker ownership verification, and symlink/containment safety are unchanged.

Added regression test:
- test_unregister_agent_artifacts_preserves_tracking_for_other_agent_mirror

Assisted-by: GitHub Copilot (model: Claude Sonnet 5, autonomous)
Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* Reconcile every historical agent on preset removal; validate child skill dirs

Fixes 3 findings from the Copilot review on HEAD 31c9b97 (#2948):

1. presets/__init__.py: remove()'s command reconciliation only recreated
   the surviving preset's content for the currently active agent, even
   though the removed preset's registered_commands could span multiple
   historical (now-inactive) agents recorded via prior rescaffolds. Now
   remove() captures every historical agent registered_commands actually
   targeted (before mutation) and passes it as extra_agents through
   _reconcile_composed_commands -> _register_for_non_skill_agents /
   _register_command_from_path -> registrar.register_commands_for_non_
   skill_agents, so the active-only restriction for install/use is
   preserved while post-removal reconciliation restores every touched
   directory.

2. presets/__init__.py: the analogous gap existed for skills. _unregister_
   skills() now returns {skills_dir: renderer_agent} for every directory it
   actually restored, and _reconcile_skills() accepts extra_skills_dirs to
   reconcile each of those directories (via a new apply_to_dir() helper),
   not only the currently active skills directory. _register_skills() gained
   optional target_dir/target_agent overrides (forcing
   create_missing_skills off for non-active directories) so a historical
   directory is only ever restored, never seeded with brand-new skills.

3. extensions/__init__.py: _extension_owned_skill_names() and both the
   fast and fallback paths of _unregister_extension_skills() validated only
   the parent skills_dir for symlink escape, then resolved
   skills_dir / skill_name and checked containment relative to that
   already-resolved parent. A per-skill child that is itself a symlink to
   a different, legitimate skill directory within the same (safe) root
   passed that containment check, so deleting/attributing through the
   symlink name could destroy or misattribute an unrelated skill reached
   only via the alias. All three call sites now run the shared
   _validate_safe_shared_directory() component-wise check against the full
   skills_dir / skill_name path (not just the parent) before any read or
   delete, rejecting a symlinked child outright rather than following it,
   even when its resolved target remains in-bounds.

Regression tests added (all confirmed red against pre-fix code, green
after):
- test_remove_reconciles_command_for_every_historical_agent
- test_remove_reconciles_skill_for_every_historical_agent
- test_extension_owned_skill_names_rejects_symlinked_child_skill_dir
- test_unregister_extension_skills_explicit_dir_rejects_symlinked_child
- test_unregister_extension_skills_fallback_rejects_symlinked_child

Tests: tests/test_presets.py (361), tests/test_extension_skills.py (69),
tests/test_extensions.py (338) all pass; tests/integrations (1768 passed,
1 skipped) pass; full suite 3902 passed / 74 skipped (90 pre-existing,
environment-only git-signing tests deselected — confirmed failing
identically on the pre-change baseline due to local 1Password SSH-agent
signing, unrelated to this change). ruff check clean on all changed files.

Assisted-by: GitHub Copilot (model: Claude Sonnet 5, autonomous)
Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* Persist historical reconciliation ownership; defer destructive toggle cleanup; validate registry-provided skill names

Round 11 review findings (5 comments on HEAD ab6c28c), three root causes:

A) Historical-agent reconciliation wrote surviving content to disk but
   discarded the returned per-agent write map, so the preset's own
   registered_commands/registered_skills never learned about directories
   reconciliation restored on its behalf. A later removal of that same
   preset then orphaned those directories. Added
   _merge_pack_registered_commands/_merge_pack_registered_skills and wired
   them into _reconcile_composed_commands and _reconcile_skills's
   apply_to_dir so every actual write is merged back into the winning
   preset's registry metadata.

B) Command<->skills toggle on an already-active agent deleted the old
   artifact before the replacement registration ran, in both
   presets/__init__.py's register_enabled_presets_for_agent and
   extensions/__init__.py's register_enabled_extensions_for_agent. If the
   replacement step raised, both artifacts were lost. Deferred the
   destructive cleanup until after the replacement phase completes
   without raising (register-new-then-remove-old ordering); the mirror
   skills->command direction was already safe since the new command file
   is always registered unconditionally before any cleanup runs.

C) _unregister_skills_in_dir and _infer_legacy_skill_provenance joined a
   registry-provided (untrusted) skill name directly onto a directory
   before any name-shape validation. An absolute in-project name discards
   the intended parent directory entirely (Path's "/" operator drops the
   left side for an absolute right side), letting a corrupted registry
   entry escape the intended skills subtree while still resolving inside
   the project root - passing the existing containment/symlink check.
   Added a centralized _is_safe_registry_skill_name guard (rejecting
   non-strings, empty strings, absolute paths, multi-component paths, and
   "."/".." ) and applied it before every path join derived from
   registry-provided skill names in both functions. Also fixed
   _infer_legacy_skill_provenance's unmatched-name fallback, which
   previously still attributed rejected names to fallback_agent even
   after the loop skipped them.

Added red-first regressions for all three root causes, covering: a
two-preset historical-command-agent survivor scenario, an analogous
skill-agent survivor scenario, injected skills-phase failure during a
preset command->skills toggle and the extension equivalent, a direct
unit test of the new name-safety guard, an absolute-path escape attempt
against _unregister_skills_in_dir, and a false-attribution attempt
against _infer_legacy_skill_provenance.

Tests: tests/test_presets.py (367 passed), tests/test_extension_skills.py
+ tests/test_extensions.py (408 passed), tests/integrations (1768
passed, 1 skipped), full suite tests -q deselecting the pre-existing
1Password-signing-affected tests/extensions/git/test_git_extension.py
(3909 passed, 74 skipped, 90 deselected). ruff check clean on all
changed files.

Assisted-by: GitHub Copilot (model: Claude Sonnet 5, autonomous)
Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* Verify replacement actually landed before retiring stale toggle artifacts

The command<->skills toggle cleanup added for #2948 deferred destructive
removal of the old-mode artifact until after the replacement registration
call completed without raising. That was necessary but not sufficient:
none of _register_skills(), _register_commands(),
register_commands_for_agent(), or _register_extension_skills() raise on
a missing source template, a safety-validation skip, or a corrupted
manifest entry — they simply return an empty or partial result. Treating
"did not raise" as "fully replaced" meant a stale artifact could still be
deleted (or its tracking dropped) even though its specific replacement
never actually landed, leaving neither artifact in place for that logical
command/skill.

Fix all four affected toggle directions by checking the replacement
call's actual return value before allowing any destructive step:

- presets command->skills (register_enabled_presets_for_agent): only
  unregister a stale command name once its corresponding skill name
  (via the existing _skill_names_for_command() helper) is confirmed
  present in the skills call's returned names for that agent; the
  remainder stays tracked and on disk.
- presets skills->command (register_enabled_presets_for_agent): only
  unregister a stale skill name once its corresponding command name is
  confirmed present in the commands call's returned names for that
  agent, using the same helper.
- extensions skills->command (register_enabled_extensions_for_agent):
  only remove a skill mirror once the matching command (mapped via the
  existing HookExecutor._skill_name_from_command() helper) is confirmed
  present in register_commands_for_agent's returned names.
- extensions command->skills (register_enabled_extensions_for_agent):
  only remove a deferred stale command once its matching skill name is
  confirmed present in _register_extension_skills()'s returned names.

All four reuse the existing command<->skill name-derivation helpers
rather than inventing new mapping logic. Registry tracking is updated to
retain exactly the unreplaced subset rather than being popped wholesale,
so partially-successful toggles leave correct, minimal tracking behind.

Added 8 new regression tests (4 presets, 4 extensions) covering both the
fully-empty and genuinely-partial result cases for each of the four
toggle directions, using real missing-source-file scenarios (not mocked
return values) to exercise the actual code paths. Confirmed red before
the fix and green after for all 8.

Focused (test_presets.py, test_extension_skills.py, test_extensions.py,
tests/integrations): 2551 passed, 1 skipped.
Full suite (tests, excluding the pre-existing environment-local
1Password-signing git-extension failures): 3917 passed, 74 skipped, 90
deselected.
ruff check: clean.

Assisted-by: GitHub Copilot (model: Claude Sonnet 5, autonomous)
Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* Retire alias command groups on toggle; scope preset cleanup to switched-away agent (#2948)

Fixes three current Copilot review findings on HEAD d0d152e:

1. Command->skills toggle cleanup only matched a stale command's own
   name against the returned replacement skill name. Aliases
   (CommandRegistrar tracks and returns primary + alias names flattened
   into one list) never have their own skill rendered -- only the
   primary command's skill is rendered -- so an alias's name could never
   match, leaving its command artifact and tracking behind forever even
   after the primary's replacement landed. Fixed identically in both
   presets (register_enabled_presets_for_agent) and extensions
   (register_enabled_extensions_for_agent): build a primary->alias
   mapping from the manifest, group stale names by primary, and
   retire/keep the whole group together based solely on whether the
   primary's skill replacement actually landed.

2. `integration switch` to a not-yet-installed target unregistered the
   old agent's extension artifacts but had no preset equivalent, so a
   preset's command overrides (including custom preset commands) and
   skill mirrors for the deactivated agent lingered as orphans. Added
   `PresetManager.unregister_agent_artifacts()`, mirroring
   `ExtensionManager.unregister_agent_artifacts()`: scoped strictly to
   the given agent, migrates a legacy flat-list `registered_skills`
   entry via existing on-disk provenance inference before removing
   anything (so other agents' real ownership is preserved rather than
   guessed or dropped), and guards against double-processing an
   artifact through both the commands and skills paths for native
   SKILL.md agents. Wired via a new `_unregister_presets_for_agent()`
   helper into the integration switch command's existing old-agent
   cleanup phase.

Added red-first regression tests:
- tests/test_presets.py: alias-group retire/keep/partial-multi-group
  tests for the command->skills toggle; unregister_agent_artifacts
  scoping tests for commands and legacy-list skill provenance.
- tests/test_extension_skills.py: alias-group retire/keep tests for the
  extension command->skills toggle.
- tests/integrations/test_integration_subcommand.py: end-to-end switch
  test proving a preset's custom command override is cleaned up when
  switching to a not-yet-installed integration, with tracking updated
  correctly and the new agent's registration unaffected.

All new tests confirmed red (AttributeError / orphaned file assertions)
before the fix and green after. Full suite: 3980 passed, 109 skipped.
ruff check clean on all changed files.

Assisted-by: GitHub Copilot (model: Claude Sonnet 5, autonomous)
Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* fix: track reconciled extension artifacts

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* Fix native skill preset reconciliation

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* Fix shared native skill cleanup

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* Fix partial preset rescaffold tracking

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* Fix preset agent skill lifecycle

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* Clarify preset removal reconciliation

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* fix(integrations): address upgrade review feedback

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* fix(presets): reconcile partial command writes

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* fix: address active artifact cleanup review

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* fix: defer preset skill cleanup to winning command

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* fix: track reconciled and partial preset skills

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* fix: reconcile project overrides to legacy skills

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* fix: harden preset skill writes and rollback

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* fix(presets): harden legacy skill restoration

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* fix(presets): preserve non-owned legacy skills

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* fix: validate reconciled skill paths

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* fix(presets): preserve reconciled skill ownership

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* fix(presets): clean reconciled agent skills

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* fix: keep legacy cleanup project-local

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* fix(presets): keep active agent's artifacts in its current mode on remove

A partially failed command<->skills toggle leaves stale tracking
(registered_commands or registered_skills) for the active agent, and
remove() replayed that history regardless of the agent's current mode:

- extra_agents re-admitted the active skills-mode agent into command
  reconciliation, recreating its command file from a surviving lower
  preset even though only_agent excluded it.
- _unregister_skills restored (and _reconcile_skills reapplied) a skill
  artifact for the active command-mode agent instead of deleting the
  preset-owned leftover.

The active agent's participation is now decided exclusively by its
current mode: reconciliation strips it from extra_agents, and removal
routes its stale skills through _delete_agent_preset_skills. Historical
replay still applies to inactive agents only (#2948).

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* fix: filter uninstalled-extension commands in reconciliation; allow active-agent layout change with presets

Two follow-ups to the upstream-main merge:

- Preset reconciliation (_reconcile_composed_commands) now skips
  extension-scoped commands (speckit.<ext>.<cmd>) whose extension is not
  installed, at the single chokepoint every install/remove/rescaffold
  pass funnels through. Registration already refused them, so
  reconciliation could materialize files no registry entry tracks. The
  duplicated per-call-site filters collapse into one
  _extension_installed_for_command helper.

- The #3415 layout-change guard predates this PR's agent-scoped preset
  rescaffold: for the active integration, _register_presets_for_agent
  now re-registers enabled presets in the new layout and retires the
  old layout's stale files, so an active-agent command<->skills toggle
  proceeds and reconciles instead of being rejected. The guard still
  rejects non-active agents (no rescaffold runs for them) and still
  fails closed on an unreadable registry.
  _installed_presets_affecting_agent also understands the per-agent
  dict shape of registered_skills this PR writes, instead of raising
  'malformed'.

Regression tests: rescaffold with an uninstalled extension's command,
CLI-level legacy<->skills toggle with an installed preset (both
directions), secondary-agent rejection, and dict-shaped
registered_skills in the guard helper.

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* fix: reject active layout change while a disabled preset owns artifacts

The post-upgrade preset rescaffold iterates enabled presets only, and a
disabled preset's artifacts are deliberately frozen until removal, so an
active-agent command<->skills layout change cannot reconcile them.
_installed_presets_affecting_agent now reports each preset's enabled
state and the guard rejects the migration while any affected preset is
disabled, with re-enable/remove guidance. Enabled presets and non-active
rejection behave as before.

Regression test: disabled preset blocks the toggle untouched; re-enabling
unblocks it and reconciles.

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* docs: replace placeholder prefix in two safety comments

Comment-only: spell out why skill deletion is restricted to
project-local directories (flat/legacy provenance cannot prove
home-directory ownership) instead of an undefined placeholder word.

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* docs: correct guard-helper docstring to active-only registration model

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* fix: fail closed on non-list values in per-agent preset provenance

A dict-shaped registered_skills/registered_commands entry with a
non-list value (e.g. null) left ownership undecidable but read as "no
artifacts", letting a layout-changing upgrade proceed on a malformed
registry. Validate values are lists and raise
_PresetRegistryUnreadableError otherwise, matching the guard's
fail-closed contract. Unit test covers both fields.

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* fix: drop eager extension unregister on layout-changing upgrade

Unregistering the agent's extension artifacts before re-registration
deleted files and registry tracking up front, so a failed or partial
re-registration left the extension with no artifacts at all. Retirement
of each opposite-mode artifact already belongs to
register_enabled_extensions_for_agent's deferred toggle cleanup, which
removes an old artifact only after its replacement is confirmed. Also
keeps disabled extensions consistent with disabled presets: artifacts
stay frozen in place with intact tracking.

Regression test corrupts the installed extension manifest so
re-registration fails, then asserts the old-layout artifacts and their
registry tracking survive the upgrade.

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* fix: rescaffold fallback integration after failed switch rollback

When Phase 2 of a switch fails, rollback restores another installed
integration as the default via _set_default_integration but never
re-registered extensions or presets for it. Under active-only
registration the fallback may never have received any artifacts (it
was installed while another integration was active), and Phase 1
already unregistered the outgoing agent's artifacts — leaving the
restored default unusable. Rescaffold both extensions and presets
(best-effort) after the fallback default is successfully restored.

Regression test: secondary codex install with the git extension, a
failing switch to generic, then asserts codex ends up with registered
extension artifacts after rollback.

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* docs: explain load-bearing pre-create loop in _reconcile_skills

The per-skill _validate_skill_subdir(create=True) loop looks like dead
code (its result is unused), but it re-creates the tracked skill
subdirectories that _unregister_skills just deleted so
_register_skills's only-overwrite-existing gate passes during a
historical-directory restore. Removing it fails
test_skill_reconciliation_preserves_per_directory_names.

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* fix: preserve dashed-description skill tracking

Use the shared frontmatter parser when verifying surviving extension skill mirrors so delimiter substrings cannot hide provenance metadata.

Assisted-by: GitHub Copilot (model: GPT-5.6 Sol, autonomous)

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* fix: skip absent extension skills during reconciliation

Filter extension-scoped commands before skill reconciliation so historical preset tracking and project overrides cannot recreate artifacts for uninstalled extensions.

Assisted-by: GitHub Copilot (model: GPT-5.6 Sol, autonomous)

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* fix: preserve partial native skill cleanup

Coordinate native-skill command cleanup with registered skill coverage per agent and command so partial rescaffolds cannot orphan preset artifacts.

Assisted-by: GitHub Copilot (model: GPT-5.6 Sol, autonomous)

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

---------

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>
 2026-07-27 14:09:40 -05:00
WOLIKIMCHENG ae82c74339 fix(kilocode): install commands under .kilo/commands (#3672) 
* fix(kilocode): write commands to .kilo/commands

* fix: guard Kilo legacy command migration

---------

Co-authored-by: root <kinsonnee@gmail.com>
 2026-07-24 11:05:32 -05:00
Ali jawwad 391cc0dff8 fix(integrations): declare PiIntegration multi_install_safe (#3652) 
* fix(integrations): declare PiIntegration multi_install_safe

PiIntegration writes only to its isolated, static root .pi/prompts,
disjoint from every other integration, yet never declared
multi_install_safe — so it inherited the IntegrationBase default False,
leaving `specify integration status` in a permanent unsafe-multi-install
ERROR state when pi is co-installed alongside another agent.

Add `multi_install_safe = True`, mirroring the isolated MarkdownIntegration
cohort (qwen, shai, qodercli) and the kiro-cli #3471 fix. The parametrized
registry isolation contracts auto-include pi and pass.

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* docs(integrations): list pi in the multi-install-safe reference table

Declaring PiIntegration multi_install_safe means the reference table in
docs/reference/integrations.md (which states it lists all currently
declared multi-install-safe integrations) should include it. Add the
alphabetized pi row with its .pi/prompts isolation path.

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
 2026-07-24 09:48:30 -05:00
Ali jawwad e9dfe900f6 fix(integrations): declare OmpIntegration multi_install_safe (#3650) 
* fix(integrations): declare OmpIntegration multi_install_safe

OmpIntegration is a plain MarkdownIntegration whose files live only under
its isolated, static root .omp/commands/, disjoint from every other
integration. But it never declared multi_install_safe, so it inherited the
IntegrationBase default False — leaving `specify integration status` in a
permanent unsafe-multi-install ERROR state whenever omp is co-installed
alongside another agent, with no acknowledgment path.

Add `multi_install_safe = True`, mirroring the isolated MarkdownIntegration
cohort (qwen, shai, qodercli, junie, kilocode) and the kiro-cli #3471 fix.
The parametrized registry isolation contracts auto-include omp once the flag
is set and pass (.omp/commands is isolated and its manifest disjoint).

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* docs(integrations): list omp in the multi-install-safe reference table

Declaring OmpIntegration multi_install_safe means the reference table in
docs/reference/integrations.md (which states it lists all currently
declared multi-install-safe integrations) should include it. Add the
alphabetized omp row with its .omp/commands isolation path.

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
 2026-07-23 11:07:40 -05:00
Quratulain-bilal e4cfa4c19c fix(integrations): declare kiro-cli multi-install safe (#3477) 
* tidy kiro-cli multi-install-safe declaration + add docs row and test

kiro-cli is declared multi_install_safe (it uses a fully isolated .kiro/
root, .kiro/prompts command dir, a stable '.' separator, and a dedicated
manifest — #3471). main ended up with the flag assigned twice in the class
body; this drops the bare duplicate and keeps a single declaration with the
comment explaining why it's safe.

also adds the missing kiro-cli row to the multi-install-safe table in
docs/reference/integrations.md, and a test asserting the flag is set (the
registry contract tests already enforce the actual path isolation against
every other safe integration).

* address review: drop agent-file column and duplicate test

per maintainer guidance on #3477: the Isolation table listed each
integration's agent-context file (AGENTS.md, CLAUDE.md, etc.) alongside
its command dir, which contradicted the safety definition (Copilot flagged
kiro-cli/codex both mapping to AGENTS.md). those context files are owned by
the optional agent-context extension, not by multi_install_safe — the flag
governs only the command directory + manifest.

- renamed the column to 'Command directory' and removed the agent-file
  entries, so it lists only what each integration actually manages
- reworded the definition to note agent-context is a separate concern and
  is not multi-install safe
- removed the duplicate test_declared_multi_install_safe (the existing
  test_declares_multi_install_safe already asserts the same thing)

* address review: keep agent-root requirement; reframe agent-context targeting

- Restore 'static, unique agent root' alongside command directory in the
  multi-install-safe definition — base.py and test_registry.py
  (test_safe_integrations_have_distinct_agent_roots) enforce both.
- Reframe the agent-context note: multi_install_safe is an integration-level
  declaration about command/skill paths, so describe context-file targeting
  as independent of it rather than calling the extension 'not multi-install
  safe'. The extension can even sync multiple anchors via context_files.

* address review: hoist multi_install_safe to top of class

Move the multi_install_safe = True declaration to the top of
KiroCliIntegration (right after key) so it is visible at the exact spot
the diff touched. The flag was never actually removed — it was declared
once further down the class — but placing it at the top makes the opt-in
unmistakable in review and keeps the single declaration. Verified the
integration still resolves multi_install_safe is True; 24 kiro-cli tests
pass.
 2026-07-23 07:41:07 -05:00
Manfred Riem a5560fcf13 docs(scripts): document the 'py' script type and sh/ps migration plan (#3284) (#3653) 
* docs(scripts): document the 'py' script type and sh/ps migration plan (#3284)

Bring remaining docs up to date with the Python (`py`) workflow-script
variant introduced in #3277, and record the retention/deprecation plan
for the shell variants.

- AGENTS.md: document the `scripts:` frontmatter (sh/ps/py), clarify the
  `{SCRIPT}` placeholder resolution, and add a "Script Types and
  Migration" section (why py is recommended, defaults, phased sh/ps
  deprecation path). Note the Python agent-context variant.
- docs/quickstart.md, docs/local-development.md: mention the `py` variant
  and `--script sh|ps|py`.
- docs/reference/integrations.md: add `py` to the `--script` rows for
  install/switch/upgrade.
- .devcontainer/devcontainer.json: auto-approve `.specify/scripts/python/`.

Closes #3284.

Assisted-by: GitHub Copilot (model: Claude Opus 4.8, autonomous)
Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com>
Copilot-Session: 298d6ec2-a330-49bc-9394-fe2b77f25ff3

* docs(scripts): address review — accurate paths, prompt behavior, scoped py claims

Addresses the review on PR #3653:

- AGENTS.md: fix the agent-context Python path to its real
  `extensions/agent-context/scripts/python/` location.
- AGENTS.md: qualify that only templates that invoke a helper script
  carry `scripts:` frontmatter (constitution/specify do not).
- AGENTS.md: narrow the availability claim — `py` covers the core
  command templates; the bundled extensions ship Python scripts on disk
  but their command templates still invoke shell variants, so `--script
  py` does not yet route extension commands to Python.
- AGENTS.md / quickstart / local-development: describe the interactive
  prompt vs. non-interactive OS default instead of "auto-selects".
- local-development: add `--script py` to the wrong-script-type fix.

Assisted-by: GitHub Copilot (model: Claude Opus 4.8, autonomous)
Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com>
Copilot-Session: 298d6ec2-a330-49bc-9394-fe2b77f25ff3

* docs(scripts): trim deprecation timeline, correct parity/scope claims (review)

Addresses the second review on PR #3653:

- Remove the speculative four-phase deprecation timeline from AGENTS.md.
  A forward-looking removal schedule is roadmap content, not contributor
  guidance, and its phases lacked an actionable adoption signal. Replace
  it with the concrete contributor parity rule plus a one-line
  current-posture note pointing removal work to the #3277 epic.
- Stop stating dual-maintenance as already eliminated: reframe "single
  source of truth" as the intended direction, noting all three variants
  are still maintained in parallel today.
- Correct the parity-coverage claim: Python ports have output-parity
  tests where the contract is stdout-based and unit tests elsewhere,
  rather than every file being compared to every shell counterpart.
- Scope the `scripts:` frontmatter rule to core command templates and
  note the agent-context/git extension templates don't use it yet.

Assisted-by: GitHub Copilot (model: Claude Opus 4.8, autonomous)
Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com>
Copilot-Session: 298d6ec2-a330-49bc-9394-fe2b77f25ff3

---------

Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com>
 2026-07-22 11:46:11 -05:00
Nurfitra Pujo Santiko 470ac5b6e6 feat: add Factory Droid CLI integration (#822) (#3587) 
Adds a skills-based integration for the Factory Droid CLI alongside the
existing Claude/Codex skills agents. The integration scaffolds
`.factory/skills/speckit-*` directories and documents the install step
in the devcontainer post-create script via the official npm
distribution (`npm install -g droid`), which matches the layout of every
other CLI install block above and avoids executing an unverified remote
shell installer. The integration is also added to the user-facing
supported-agent table in `docs/reference/integrations.md` so the new key
is discoverable from the published documentation, as required by the
"Updating this documentation" guideline in AGENTS.md.

Operator-supplied extra args via `SPECKIT_INTEGRATION_DROID_EXTRA_ARGS`
are appended after the canonical Spec Kit flags so the canonical flags
are always present in argv. The Factory Droid CLI parser uses
last-wins duplicate-flag semantics (verified empirically against
droid 0.175.0), so a later operator-supplied value may override the
canonical one — this is a deliberate inversion of the cursor-agent /
opencode / codex ordering.

Includes:
- `src/specify_cli/integrations/droid/__init__.py` (subpackage)
- `tests/integrations/test_integration_droid.py` (46 tests, including
  regression coverage for the no-trailing-newline frontmatter fusion
  bug, idempotent skill injection, and env-var path resolution)
- `integrations/catalog.json` entry + `updated_at` bump
- Alphabetical registration in `src/specify_cli/integrations/__init__.py`
  and `tests/integrations/test_registry.py`
- Devcontainer Droid install block via the npm distribution
  (`npm install -g droid`), replacing the earlier curl-based installer
- User-facing supported-agent table row in
  `docs/reference/integrations.md` (key `droid`, `.factory/skills/`
  layout, `/speckit-<command>` invocation)
- `AGENT_CONFIG` entry and matching alphabetical entries in
  `tests/test_agent_config_consistency.py` (`ISSUE_TEMPLATE_AGENT_KEYS`)
  and the three issue-template dropdowns (`agent_request.yml`,
  `bug_report.yml`, `feature_request.yml`) so
  `test_issue_template_agent_lists_match_runtime_integrations` keeps
  the runtime/template surfaces synchronized

Closes #822

Assisted-by: Droid (oracle-reviewer)

Assisted-by: Droid (model: MiniMax M3, autonomous)

Co-authored-by: factory-droid[bot] <138933559+factory-droid[bot]@users.noreply.github.com>
 2026-07-22 07:49:48 -05:00
Davide Barletta 74662cffad feat: update Bob integration to skills-based layout for Bob 2.0 (#3415) 
* feat: update Bob integration to skills-based layout for Bob 2.0

Bob 2.0 replaces the command-based workflow (.bob/commands/*.md) with
a skills-based layout (.bob/skills/speckit-<name>/SKILL.md), matching
the pattern used by Claude Code, Codex, and other skills-first agents.

- Switch BobIntegration from MarkdownIntegration to SkillsIntegration
- Update folder/dir from .bob/commands to .bob/skills
- Change extension from .md to /SKILL.md (skills layout)
- Add --skills option (default: True) consistent with Codex pattern
- Update tests to inherit from SkillsIntegrationTests (28 tests pass)
- Bump catalog entry to version 2.0.0 with updated description

Assisted-by: IBM Bob (model: claude-sonnet-4-5, autonomous)

* PR comments fix: keep old Bob 1 commands till next release

* Copilot suggested change

Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>

* feat(bob): address copilot comments, make skills layout default, demote legacy commands to opt-in

* fix(bob): honor legacy_commands in ai_skills persistence and add bob to ALWAYS_SLASH_AGENTS

- init.py: suppress ai_skills=True when --legacy-commands is passed so
  extensions and presets target .bob/commands, not .bob/skills
- _invocation_style.py: add 'bob' to ALWAYS_SLASH_AGENTS so init next-steps
  and hook invocations always show /speckit-<name> (skills is the default
  layout; no ai_skills flag required)

* Copilot suggestion

Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>

* fix(bob): extend IntegrationBase directly to avoid false isinstance(SkillsIntegration)

- bob/__init__.py: switch BobIntegration base from SkillsIntegration to
  IntegrationBase; add _BobSkillsHelper for skills-mode delegation; set
  invoke_separator='-' explicitly; set _skills_mode flag in setup() so
  consumers can derive the effective mode without isinstance checks
- _helpers.py: replace isinstance(integration, SkillsIntegration) guard
  with getattr(_skills_mode) so legacy-commands mode does not persist
  ai_skills=True
- _invocation_style.py: remove 'bob' from ALWAYS_SLASH_AGENTS — Bob 2.0
  skills are invoked via natural language, not /skill-name slash commands
- integrations/catalog.json: advance updated_at to 2026-07-15

* fix(lint): remove unused SkillsIntegration import from _helpers.py

* Copilot suggested change

Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>

* feat(bob): add bob skills integration with registrar-based mode detection

* address 3 comments from copilot

* feat(bob): update registrar config to use legacy commands layout

* fix lint

* Suggested fix from Copilot

Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>

* fix pr comment

* fix pr comment

* fix pr comment

* refactor(bob): resolve skills mode via base-class hooks + fix command-ref separators

Rework the dual-mode handling introduced for Bob 2.0 so an integration's
internal representation never leaks into shared init/install/upgrade code,
and fix the legacy command-reference separator surfaced in review.

Base-class contract:
- Add IntegrationBase.is_skills_mode(parsed_options) — the single hook the
  shared machinery consults to decide whether to persist ai_skills and render
  skill invocations. SkillsIntegration returns True; Copilot honors --skills /
  self._skills_mode; Bob returns `not legacy_commands`.
- Add IntegrationBase.invoke_separator_for_mode(skills_enabled) — resolves the
  command-ref separator from a project's persisted mode for registration paths
  that only have the ai_skills flag (no CLI parsed_options). Default is
  behavior-preserving; Bob maps skills->"-", legacy->".".
- BobIntegration stays on IntegrationBase (mirroring Copilot, the other
  dual-mode agent) and delegates setup() to internal _BobSkillsHelper /
  _BobMarkdownHelper. Removes the _skills_mode method and all
  isinstance(SkillsIntegration) / callable(_skills_mode) probing from
  _helpers.py and init.py.

Fix legacy separator (review feedback): CommandRegistrar.register_commands and
PresetManager._resolve_skill_command_refs previously read the single static
AGENT_CONFIGS[key]["invoke_separator"], so legacy .bob/commands/ extension and
preset command refs rendered /speckit-<cmd> instead of Bob 1.x /speckit.<cmd>.
Both now resolve the separator per project mode via invoke_separator_for_mode.

Tests: add regression coverage for the is_skills_mode / invoke_separator_for_mode
hooks and legacy extension command-ref separators; normalize a width-sensitive
workflow assertion to match its siblings. Full suite green.

Assisted-by: GitHub Copilot (model: Claude Opus 4.8, autonomous)
Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com>
Copilot-Session: 63f93544-a77f-4f01-bf04-c88806a97dbf

* fix(bob,copilot): address review — preserve legacy layout, dual-mode separators, extension-skill token resolution

Addresses PR review 4716036212 (3 comments):

1. Bob legacy-install regression: `use`/`switch`/`upgrade` on an existing
   Bob 1.x project (only `.bob/commands/` on disk, no stored
   `legacy_commands`) called `is_skills_mode(None)` -> True and rewrote
   `ai_skills=True`, silently switching extension/command-reference handling
   to the skills layout. `is_skills_mode` now takes an optional `project_root`;
   Bob preserves an already-installed legacy layout until an explicit upgrade
   creates `.bob/skills/`. A fresh project still defaults to skills.

2. Copilot dual-mode separator: `invoke_separator_for_mode` was inherited
   from the base (mode-independent) and returned Copilot's static `.`, so
   preset/extension command refs in a Copilot skills project rendered
   `/speckit.<name>` instead of `/speckit-<name>`. Override it on Copilot to
   track the persisted `ai_skills` state, consistent with
   `build_command_invocation` and `effective_invoke_separator`.

3. Bob extension-skill command-ref tokens: verified that merging main's
   generic `_resolve_command_ref_tokens` (#3544) resolves Bob's tokens via
   the `CONDITIONAL_SLASH_AGENTS` path (`/speckit-<name>`); added Bob to the
   command-ref regression parametrize plus dedicated Bob use-path tests.

All tests pass (full suite green; merged with current main incl. #3544).

Assisted-by: GitHub Copilot (model: Claude Opus 4.8, autonomous)
Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com>
Copilot-Session: 63f93544-a77f-4f01-bf04-c88806a97dbf

* fix(bob): resolve command-ref separator with project-aware mode before shared-infra refresh (review #3415)

The `use`/`switch` paths refresh shared infrastructure via
`_with_integration_setting()` / `_invoke_separator_for_integration()`,
which previously resolved the invoke separator through
`effective_invoke_separator` / `is_skills_mode` WITHOUT a project_root.
For a pre-PR Bob 1.x project (.bob/commands/ on disk, no stored options),
this defaulted to the skills "-" separator and rewrote rendered
shared-template command refs to /speckit-*, even though ai_skills stayed
false. Thread project_root through effective_invoke_separator, the two
runtime helpers, and every call site so Bob's on-disk legacy detection
governs the separator before shared infra is refreshed.

Add a rendered-shared-template regression test covering `use --force`.

Assisted-by: GitHub Copilot (model: Claude Opus 4.8, autonomous)
Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com>
Copilot-Session: 63f93544-a77f-4f01-bf04-c88806a97dbf

* fix(bob): scope persisted ai_skills flag to active agent when resolving command-ref separator (review #3415)

`register_commands` runs once per detected agent, but the persisted
`ai_skills` flag describes only the active integration (`opts["ai"]`).
When another agent (e.g. Copilot) is active in skills mode while a
legacy `.bob/commands` layout is also present, the previous code passed
that global `True` to Bob's `invoke_separator_for_mode`, rewriting Bob
1.x command refs to `/speckit-*` instead of `/speckit.*`.

Only consult the persisted flag for the agent it describes
(`opts["ai"] == agent_name`); otherwise resolve the separator from the
agent's own project-aware `effective_invoke_separator(None, project_root)`.

Add regression tests covering the mismatched-active-agent case and a
control for Bob-active skills mode.

Assisted-by: GitHub Copilot (model: Claude Opus 4.8, autonomous)
Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com>
Copilot-Session: 63f93544-a77f-4f01-bf04-c88806a97dbf

* fix(bob): detect Spec Kit layout from managed artifacts, not any skills dir (review #3415)

Two related mis-detections from review 4723246468:

1. `BobIntegration.is_skills_mode` treated the mere presence of a
   `.bob/skills/` directory as proof the project is skills-based. A legacy
   Spec Kit install (managed `.bob/commands/speckit.*.md`) that also carried
   unrelated Bob 2 skills would be misclassified as skills, so
   `integration use bob` persisted `ai_skills` and rewrote shared refs.
   Now the layout is inferred from managed Spec Kit artifacts: legacy/command
   mode only when managed `speckit.*.md` command files exist and no managed
   `speckit-*` skill dirs do.

2. The `register_commands` separator for an inactive agent used a disk-based
   `effective_invoke_separator(None, project_root)` fallback that could pick
   the skills separator even though the registrar writes the static command
   layout (`.bob/commands/*.md`). Inactive agents now resolve the separator
   from the registrar's actual output layout (`extension == "/SKILL.md"`),
   so command-layout files keep `/speckit.*` refs regardless of sibling dirs.

Update the affected hook/E2E tests to use managed artifacts and add
regression tests for the mixed-layout and inactive-registrar scenarios.

Assisted-by: GitHub Copilot (model: Claude Opus 4.8, autonomous)
Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com>
Copilot-Session: 63f93544-a77f-4f01-bf04-c88806a97dbf

* fix(bob): apply managed-artifact detection on upgrade + consistent skill post-processing (review #3415)

Two issues from review 4723782860:

1. `BobIntegration.setup()` resolved the layout via `is_skills_mode(parsed_options)`
   WITHOUT `project_root`, so `integration upgrade bob` on a Bob 1.x install
   (managed `.bob/commands/speckit.*.md`, no stored options) ignored the
   existing command files, generated skills, and stale-deleted the legacy
   commands — silently migrating the project. Pass `project_root` so the same
   managed-artifact detection used by `use` also governs upgrades.

2. Only `_BobSkillsHelper` overrode `post_process_skill_content` to suppress
   the shared slash-command hook note. Preset/extension skill generators call
   that hook on the registered `BobIntegration`, which inherited
   `IntegrationBase`'s note-injecting default. Repeat the no-op (delegating to
   the skills helper) on the registered class so every Bob skill-generation
   path is consistent with intent-activated core Bob skills.

Add regression tests for the upgrade-preservation and post-processing paths.

Assisted-by: GitHub Copilot (model: Claude Opus 4.8, autonomous)
Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com>
Copilot-Session: 63f93544-a77f-4f01-bf04-c88806a97dbf

* feat(bob): add --skills migration opt-in; fix separator + manifest loss (review #3415)

Address review #3415 (4724160183):

- Comment 1: Add an explicit `--skills` opt-in to BobIntegration. It forces
  the skills layout over on-disk auto-detection, giving legacy Bob 1.x
  installs a supported migration path
  (`integration upgrade bob --integration-options="--skills"`). `--skills`
  and `--legacy-commands` are mutually exclusive (clean exit-1 error).

- Comment 2: In CommandRegistrar.register_commands, derive the command-ref
  separator from the output layout (agent_config["extension"]) for the
  active agent too, not the persisted ai_skills flag. A command-layout file
  (.bob/commands/*.md, .github/agents/*.agent.md) always renders /speckit.*;
  only a /SKILL.md scaffold uses /speckit-*. Dual-layout agents (Bob,
  Copilot) write skills via their own setup()/skills path, so
  register_commands only ever emits their command-layout files.

- Comment 3: Update docs/reference/integrations.md Bob entry to document the
  skills-based default (.bob/skills/), the deprecated --legacy-commands
  opt-out, and the --skills migration path.

Also fix a latent manifest-loss bug surfaced by the migration path: the
upgrade Phase 2 stale-file cleanup built a throwaway manifest sharing the
integration key and called uninstall(), which always deleted
{key}.manifest.json. Any layout-shrinking upgrade (e.g. legacy->skills)
thus wiped the freshly-saved manifest, leaving the project untracked and
un-upgradeable. uninstall() now takes remove_manifest (default True); the
stale-cleanup pass passes False.

Adds regression tests for the --skills opt-in, mutual exclusion, corrected
active-agent separator, remove_manifest=False, and an end-to-end
legacy->skills migration that verifies the manifest survives and the
project remains upgradeable. Full suite: 4555 passed, 5 skipped.

Assisted-by: GitHub Copilot (model: Claude Opus 4.8, autonomous)
Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com>
Copilot-Session: 63f93544-a77f-4f01-bf04-c88806a97dbf

* docs(agents): align token-resolution comment with output-layout separator rule (review #3415)

Address review #3415 (4725516805). The comment above resolve_command_refs
still described the removed state-based behavior ("resolve it from the
integration using the project's persisted skills state"). Update it to
describe the output-layout rule that register_commands now uses: _sep is
derived from the layout this registrar writes (a /SKILL.md scaffold uses the
skills separator; a command-layout file uses the command separator), not the
persisted ai_skills state. Comment-only change; no behavior change.

Assisted-by: GitHub Copilot (model: Claude Opus 4.8, autonomous)
Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com>
Copilot-Session: 63f93544-a77f-4f01-bf04-c88806a97dbf

* fix(bob): reconcile extension artifacts on layout change (review #3415)

When a dual-mode agent (Bob) flips between the legacy commands layout and
the skills layout during `integration upgrade` (via `--skills` /
`--legacy-commands`), the old layout's extension command/skill files were
left orphaned: Phase 2 stale cleanup only removes files tracked by the
*integration* manifest, while extension artifacts are tracked in the
extension registry. Detect the layout flip by comparing whether the old vs
new manifest tracks a `/SKILL.md` scaffold, and when it changed, unregister
the agent's extension artifacts before the existing re-registration so they
are recreated in the new layout (and the per-agent registry is updated).

Preset artifacts are documented as a known, pre-existing cross-cutting gap:
no agent-scoped preset re-registration exists in use/switch/upgrade for any
agent, so reconciling them is out of scope for this Bob migration.

Assisted-by: GitHub Copilot (model: Claude Opus 4.8, autonomous)
Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com>
Copilot-Session: 63f93544-a77f-4f01-bf04-c88806a97dbf

* fix(bob): reject layout migration when preset overrides are installed (review #3415)

A command↔skills layout change during `integration upgrade` cannot reconcile
preset artifacts: presets track their command/skill files in per-preset
`registered_commands`/`registered_skills` metadata, and there is no
agent-scoped preset re-registration anywhere in the CLI. Migrating would
delete a preset's old-layout files without recreating them in the new layout
and leave the preset registry claiming artifacts that no longer exist.

Detect the intended layout via `is_skills_mode` (so a plain same-layout
upgrade is unaffected) and, when it flips while preset overrides are
installed for the agent, reject the upgrade *before any mutation* with an
actionable error pointing at the remove → upgrade → reinstall workaround.
Extension artifacts are still reconciled for the safe (no-preset) case.

Adds a regression test and documents the migration caveat in the Bob
integration reference entry.

Assisted-by: GitHub Copilot (model: Claude Opus 4.8, autonomous)
Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com>
Copilot-Session: 63f93544-a77f-4f01-bf04-c88806a97dbf

* fix(bob): restrict layout reconciliation to the active integration (review #3415)

`integration_upgrade` supports upgrading a secondary (non-active) integration,
but the layout-change extension reconciliation was unsafe there.
`ExtensionManager.unregister_agent_artifacts()` treats the unscoped
per-extension `registered_skills` list as belonging to the passed agent and,
when that agent's skills directory is absent, falls back to scanning every
agent's skills directory — so reconciling a secondary Bob layout flip could
delete or untrack the *active* agent's extension skills. The subsequent
re-registration cannot repair that because extension skill rendering is
intentionally scoped to the active agent (#2948).

Gate the unregister-before-register reconciliation on `installed_key == key`
so it only runs for the active integration. Secondary agents only ever have
extension command files (skills are active-agent-only), which the existing
re-registration rewrites in place, so skipping the unregister orphans nothing
new. Adds a regression test asserting a secondary Bob layout change leaves the
active agent's extension skill intact on disk and in the registry.

Assisted-by: GitHub Copilot (model: Claude Opus 4.8, autonomous)
Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com>
Copilot-Session: 63f93544-a77f-4f01-bf04-c88806a97dbf

* fix(bob): fail closed when preset registry is unreadable (review #3415)

Address review 4744636079:

- _migrate_commands: the preset guard previously failed *open* — a
  registry read/parse error returned an empty "no presets" list, so a
  --force layout-changing upgrade could delete preset-overridden command
  files while their registry state was unknown. Read the registry file
  directly and raise _PresetRegistryUnreadableError on any read/parse
  failure or malformed structure, rejecting the migration before any
  mutation. A genuinely absent registry still returns [] (safe).

- bob: correct the is_skills_mode docstring — upgrade *does* run setup();
  disk detection is needed because legacy Bob 1.x installs never persisted
  a legacy_commands option, so the stored mode is unavailable.

- tests: add fail-closed E2E (corrupted registry rejected, valid-empty
  allowed) plus a unit test for _installed_presets_affecting_agent covering
  absent / corrupted / malformed / valid / affecting-agent cases.

Assisted-by: GitHub Copilot (model: Claude Opus 4.8, autonomous)
Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com>
Copilot-Session: 63f93544-a77f-4f01-bf04-c88806a97dbf

* fix(bob): fail closed on malformed preset entries too (review #3415)

Address review 4745191015: the preset guard read a parseable registry but
silently skipped malformed per-preset metadata and treated a malformed
registered_commands value as "no matching artifacts". A registry such as
{"presets":{"p1":[]}} therefore allowed a layout migration even though p1's
ownership is unknown, risking deletion of preset-managed files. Now raise
_PresetRegistryUnreadableError for a non-dict preset entry, a non-dict
registered_commands, or a non-list registered_skills. Extend the unit test
to cover these malformed shapes.

Assisted-by: GitHub Copilot (model: Claude Opus 4.8, autonomous)
Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com>
Copilot-Session: 63f93544-a77f-4f01-bf04-c88806a97dbf

---------

Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>
Co-authored-by: Manfred Riem <15701806+mnriem@users.noreply.github.com>
Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com>
 2026-07-21 09:20:20 -05:00
Ali jawwad 2df0394cb2 docs(integrations): document the 'integration list --catalog' flag (#3530) 
* docs(integrations): document the 'integration list --catalog' flag

'specify integration list' accepts a --catalog flag (integrations/_query_commands.py:
typer.Option(False, "--catalog", ...)) that browses the full built-in +
community catalog, but the Integrations reference documented no options for the
list command. Add an option table for it, matching the style used by the sibling
'integration search' and 'integration catalog add' sections.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* docs(integrations): clarify that default 'integration list' shows only built-ins

The --catalog row implied the default list already includes the full installed
set; in fact 'integration list' iterates INTEGRATION_REGISTRY (built-ins) and
marks installed status, so a community integration that is not built in only
appears with --catalog. Reword the option and the intro sentence to say the
default shows the built-in integrations and --catalog adds community ones.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
 2026-07-17 15:09:28 -05:00
Manfred Riem 396fc2c240 docs: reframe SDD positioning, modernize install, and de-duplicate walkthroughs (#3565) 
* docs: reframe SDD positioning, modernize install, and de-duplicate walkthroughs

Reframe the landing page so Spec Kit reads as a toolkit for Spec-Driven
Development *or your own process* with any AI coding agent, and correct
stale claims: context files and git are now opt-in extensions, and the
install path uses PyPI (specify-cli). Generalize the landing cards to
cover bundles and catalog hosting across all primitives.

Restructure the Quick Start into a lean, guided Taskify walkthrough with
one command per step (install as a prerequisite, Steps 1-9 aligned with
the Full path), and extract the deep per-command detail into two new
reference pages: reference/agentic-sdd.md (the /speckit.* SDD process)
and reference/agentic-bugfix.md (the bug extension). Retitle the
reference overview to "Reference" and group these agentic processes in
their own section, distinct from CLI-managed primitives.

Remove the duplicated "Detailed Process" walkthrough from README.md
(and its TOC entry), repointing readers to the docs-site Quick Start
while keeping the concise "Get Started" section as the front door.

Assisted-by: GitHub Copilot (model: Claude Opus 4.8, supervised)
Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com>
Copilot-Session: 9d9232f8-ece4-4aa6-a9bd-ff8d74ca1c89

* docs: address review feedback on accuracy and scope

- quickstart: correct the git/feature note — resolution reads
  .specify/feature.json / SPECIFY_FEATURE, not the checked-out branch,
  so switching branches alone does not switch the active feature.
- quickstart + agentic-sdd: add an invocation-style note ($speckit-* for
  Codex/ZCode, /skill:speckit-* for Kimi) so the agent-neutral commands
  are executable everywhere.
- agentic-sdd: fix the tasks phase structure to match the generator
  (Setup, Foundational, one phase per user story, final Polish; tests
  optional within user-story phases).
- index: soften the catalog claim (catalogs curate discovery, not an
  install allow-list) and relabel the "CLI reference" link to "Reference"
  to match the retitled, broader page.

Assisted-by: GitHub Copilot (model: Claude Opus 4.8, supervised)
Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com>
Copilot-Session: 9d9232f8-ece4-4aa6-a9bd-ff8d74ca1c89

* docs: correct feature-resolution override and add bug-command invocation note

- quickstart: the previous fix named the wrong override. The active
  feature *directory* resolves from SPECIFY_FEATURE_DIRECTORY then
  .specify/feature.json; SPECIFY_FEATURE only supplies the identifier
  after a directory is resolved. Rewrite the note to point users at
  .specify/feature.json / SPECIFY_FEATURE_DIRECTORY, and clarify the git
  extension's branches don't by themselves change the active feature.
- agentic-bugfix: add the same invocation-style caveat as the SDD
  reference ($speckit-bug-* for Codex/ZCode, /skill:speckit-bug-* for
  Kimi).

Assisted-by: GitHub Copilot (model: Claude Opus 4.8, supervised)
Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com>
Copilot-Session: 9d9232f8-ece4-4aa6-a9bd-ff8d74ca1c89

* docs: tighten bug-command contracts and drop numbered-phase examples

- agentic-bugfix: don't overstate overwrite protection — an interactive
  run can overwrite an existing assessment after confirmation; only
  automated mode refuses and picks a new slug. Correct the verify verdict
  to the schema's verified/partial/failed (not-run is a per-check status);
  an unexercised reproduction downgrades the result to partial.
- agentic-sdd: the implement examples labeled scoping "Phase 1/2", but
  the tasks contract reserves Phase 1 for Setup and Phase 2 for
  Foundational (user stories start at Phase 3). Scope by phase name and
  user-story content instead to avoid mis-scoping execution.

Assisted-by: GitHub Copilot (model: Claude Opus 4.8, supervised)
Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com>
Copilot-Session: 9d9232f8-ece4-4aa6-a9bd-ff8d74ca1c89

---------

Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com>
 2026-07-16 11:08:25 -05:00
Nate Chadwick fd101d531e feat(integrations): add Grok Build skills-based integration (#3535) 
* feat(integrations): add Grok Build skills-based integration

Add first-class support for xAI Grok Build via SkillsIntegration, installing
speckit skills under .grok/skills and wiring init/invocation/catalog surfaces.

Assisted-by: Grok Build (model: grok-4, supervised)

* test+docs: address Copilot review on Grok multi-install and next steps

Assert init next-steps guidance for Grok (.grok/skills, /speckit-*) and
clarify that multi-install safety is path/manifest isolation, not
agent-context defaults such as shared AGENTS.md.

* fix(integrations): Grok headless --always-approve and isolation paths

Document Grok multi-install isolation as .grok/skills and .grok/rules.
Override build_exec_args to pass --always-approve so non-interactive
dispatch is not blocked at tool permission gates.

* docs(integrations): list only managed .grok/skills for Grok isolation

Multi-install isolation documents Spec Kit-managed paths; Grok only
writes .grok/skills, so drop the read-only .grok/rules entry.

* fix(integrations): always-slash Grok hooks and refresh catalog date

Move grok to ALWAYS_SLASH_AGENTS so hooks never emit /speckit.plan when
ai_skills is missing/false. Update slash-format tests, persist ai_skills
on init, and bump catalog updated_at for the Grok entry.

---------

Co-authored-by: Nate Chadwick <1232206+natechadwick@users.noreply.github.com>
Co-authored-by: test <test@example.com>
 2026-07-15 14:55:25 -05:00
Quratulain-bilal a10fd2f355 docs: document copilot skills mode (--skills) and markdown deprecation (#3313) 
* docs: document copilot skills mode (--skills) and markdown deprecation

as of #3256 (v0.12.3) the copilot integration supports a skills mode via
`--integration-options "--skills"`, and installing without it warns that the
legacy markdown default is being phased out. this was undocumented:

- the copilot row in the supported-agents table had an empty notes cell while
  other skills-capable agents describe their behavior there.
- `--skills` was missing from the integration-specific options table (only
  generic and kimi were listed).

fill both. wording matches the code: skills scaffold as speckit-<name>/SKILL.md
under .github/skills/ and are invoked as /speckit-<name>; without the flag the
install emits the deprecation warning from _warn_legacy_markdown_default().

fixes #3300

* docs: describe copilot default as legacy markdown mode (.agent.md + .prompt.md)

the copilot rows said the default installs .agent.md files, but the default
scaffold also writes companion .prompt.md files under .github/prompts/. also
reworded to 'legacy markdown mode' to match the deprecation warning users
actually see and to avoid ambiguity, since skills are markdown too.

* docs: spell out copilot legacy markdown paths and use <command> in copilot rows

address the follow-up copilot review: name where the default scaffold writes
files (.github/agents/*.agent.md plus .github/prompts/*.prompt.md and a
.vscode/settings.json merge), and switch speckit-<name> to speckit-<command>
to match the rest of the table. verified all three paths against the copilot
integration source.

* docs: use --integration-options="..." form in copilot notes cell

match the equals form the rest of the doc uses (generic row, the options
table, and the install example) so readers don't mistake the quotes for part
of the value. addresses copilot review feedback.
 2026-07-13 09:10:14 -05:00
Quratulain-bilal 288bd679f3 docs: drop stale kimi KIMI.md->AGENTS.md migration note (#3291) 
* docs: drop stale kimi KIMI.md->AGENTS.md migration note

#3097 made the agent-context extension a full opt-in and removed the
KIMI.md -> AGENTS.md context migration from the kimi integration
(_migrate_legacy_kimi_context_file and the context_file handling are
gone). kimi's --migrate-legacy now only moves the skills directory. two
lines in the integrations reference still promised the removed context
migration; drop that clause so the docs match the code.

* docs: clarify kimi legacy migration is skill naming, not directory names

address review: the parenthetical said 'dotted->hyphenated directory
names', but the migration is about skill naming (speckit.xxx ->
speckit-xxx), matching the module docstring. reword to match.
 2026-07-02 08:40:30 -05:00
Ben Buttigieg 36501d459f chore: retire Roo Code integration — extension shut down (#3167) (#3212) 
* chore: retire roo integration — extension shut down (#3167)

Remove the Roo Code integration after the extension was shut down: subpackage,
registry entry, catalog entry, docs, tests, and issue-template options.

Assisted-by: GitHub Copilot (model: Claude Opus 4.8, autonomous)
Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* docs: remove stale Roo Code mention in upgrade guide

Assisted-by: GitHub Copilot (model: gpt-5.3-codex, autonomous)

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* chore: remove leftover Roo Code references after merge

Drop roo from presets/ARCHITECTURE.md example and the agent-context
defaults map; these came in from main and were flagged by review.

Assisted-by: GitHub Copilot (model: claude-opus-4.8, autonomous)

---------

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>
 2026-06-30 10:24:04 -05:00
Ben Buttigieg c47dd2b812 chore: retire Windsurf integration — absorbed into Cognition Devin (#3168) (#3213) 
* chore: retire windsurf integration — absorbed into Cognition Devin (#3168)

windsurf.com now permanently redirects to devin.ai/desktop following
acquisition. Remove subpackage, registry/catalog entries, docs, and tests;
re-point sample-agent test fixtures to Kilo Code.

Assisted-by: GitHub Copilot (model: Claude Opus 4.8, autonomous)
Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* docs: remove stale Windsurf support references

Assisted-by: GitHub Copilot (model: gpt-5.3-codex, autonomous)

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* docs: fix Kilo Code command path in upgrade guide

Assisted-by: GitHub Copilot (model: gpt-5.3-codex, autonomous)

Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com>

* chore: align integration lists after rebase

Assisted-by: GitHub Copilot (model: gpt-5.3-codex, autonomous)

Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com>

* docs: align kilocode example with runtime behavior

Assisted-by: GitHub Copilot (model: gpt-5.3-codex, autonomous)

Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com>

---------

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>
 2026-06-30 08:49:49 -05:00
Ben Buttigieg 28a38af6c1 chore: retire iflow integration — product discontinued (#3166) (#3211) 
Remove the iFlow CLI integration whose product was shut down: subpackage,
registry entry, catalog entry, docs, tests, and issue-template options.

Assisted-by: GitHub Copilot (model: Claude Opus 4.8, autonomous)

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>
 2026-06-30 07:30:52 -05:00
Ben Buttigieg 8215f3308b docs(codebuddy): fix dead install links and CodeBuddy capitalization (#3172) (#3216) 
* fix(codebuddy): repoint install_url to codebuddy.cn (#3172)

The codebuddy.ai domain no longer resolves; CodeBuddy consolidated onto
codebuddy.cn (Tencent). Update install_url and docs links to
https://www.codebuddy.cn/cli (verified live).

Assisted-by: GitHub Copilot (model: Claude Opus 4.8, autonomous)
Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* docs: use canonical 'CodeBuddy' capitalization in installation prereqs

Address Copilot review: the link text read 'Codebuddy CLI' while the rest of
the docs and the integration metadata use 'CodeBuddy'.

Assisted-by: GitHub Copilot (model: Claude Opus 4.8, autonomous)
Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

---------

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>
 2026-06-30 07:29:33 -05:00
Quratulain-bilal 00f6a80201 docs: document integration catalog subcommands (#3206) 
* docs: document integration catalog subcommands

the integration reference omits the 'specify integration catalog'
subcommand group (list/add/remove) that exists in code, while the
extension, preset, and workflow references all document their catalog
equivalents. add a catalog management section matching that structure.

* docs: address review feedback on integration catalog section

- catalogs are consulted by the discovery commands (search/info), not
  install; install resolves from the built-in registry
- 'catalog list' shows project sources as removable only when configured,
  otherwise active sources are non-removable
 2026-06-30 06:13:17 -05:00
Noor ul ain 9dfef8629e docs: document integration search/info/scaffold subcommands (#3174) (#3194) 
* docs: document integration search/info/scaffold subcommands (#3174)

docs/reference/integrations.md omitted three subcommands that exist in
code, breaking parity with the extension/preset/bundle/workflow
references which all document their search/info equivalents.

Added sections for:
- `specify integration search [query]` (--tag, --author)
- `specify integration info <integration_id>`
- `specify integration scaffold <key>` (--type: markdown/skills/toml/yaml)

Content mirrors the command docstrings, arguments, and options in
src/specify_cli/integrations/_query_commands.py and _scaffold_commands.py.

Fixes #3174.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* Potential fix for pull request finding

Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>

* Potential fix for pull request finding

Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>

---------

Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>
 2026-06-29 16:52:01 -05:00
Ben Buttigieg b1bd9180ca fix(goose): repoint install_url and docs to goose-docs.ai (#3171) (#3215) 
* fix(goose): repoint install_url and docs to goose-docs.ai (#3171)

Goose moved to the Agentic AI Foundation; docs moved from block.github.io/goose
to goose-docs.ai. Update install_url and the docs reference link.

Assisted-by: GitHub Copilot (model: Claude Opus 4.8, autonomous)
Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* docs(goose): restore table column alignment

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>
Assisted-by: GitHub Copilot (model: Claude Opus 4.8, autonomous)

---------

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>
 2026-06-29 16:43:06 -05:00
Dyan Galih 465d29910e Docs: add cline and zcode to multi-install-safe table (#3180) 
Fixes #3175
 2026-06-26 12:21:38 -05:00
Dyan Galih 916e29b27b Docs: document missing flags --force and --refresh-shared-infra (#3179) 
* Docs: document missing flags --force and --refresh-shared-infra

Fixes #3177

* Address review: Reorder flags to match CLI help output
 2026-06-26 12:20:51 -05:00
meymchen dc840f07d0 feat(integration): update Kimi integration for Kimi Code CLI (#2979) 
* feat(integration): update Kimi integration for Kimi Code CLI

Update the Kimi integration to target the new Kimi Code CLI
(MoonshotAI/kimi-code) layout:

- Change skills directory from .kimi/skills/ to .kimi-code/skills/
- Change context file from KIMI.md to AGENTS.md
- Extend --migrate-legacy to move old .kimi/skills/ installs and
  migrate KIMI.md user content to AGENTS.md
- Clean up leftover legacy .kimi/skills/ directories on teardown
- Update devcontainer installer to @moonshot-ai/kimi-code
- Update docs and tests

Relates to #1532

* fix(integration): align Kimi dispatch and harden legacy migration

- Override build_command_invocation to emit /skill:speckit-<stem>
  so dispatched commands match Kimi Code CLI's native slash syntax.
- Skip symlinked .kimi/skills directories during legacy migration
  and teardown to avoid operating on files outside the project.
- Remove kimi from the multi-install-safe integrations table.
- Add tests for command invocation and symlink safety.

* fix(integration): resolve custom context markers in Kimi legacy migration

Use IntegrationBase._resolve_context_markers() when migrating legacy
KIMI.md content so that projects with customized context_markers in
.specify/extensions/agent-context/agent-context-config.yml have the
managed section stripped with the correct markers instead of the
hard-coded defaults.

Adds a test verifying custom markers are respected during
--migrate-legacy.

* fix(integration): harden Kimi legacy migration against symlinked paths

* fix(kimi): guard symlinked SKILL.md during migration and teardown

* docs(kimi): mention KIMI.md→AGENTS.md migration in --migrate-legacy help

The --migrate-legacy help text listed only the skills directory move and
dotted→hyphenated renaming, but the flag also migrates KIMI.md user content
into AGENTS.md. Align the help with the actual behavior, docs, and tests.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* fix(kimi): validate legacy migration destination; clarify docstrings

Address Copilot review feedback on PR #2979:

- setup(): gate skills migration on _is_safe_legacy_dir(new_skills_dir)
  as well as the source. base setup() already rejects a destination that
  escapes the project root, but an in-tree symlinked .kimi-code/skills
  (e.g. -> .) could still misdirect the move; this gives the destination
  the same symlink-component protection as the source.
- _migrate_legacy_kimi_dotted_skills: rewrite docstring as a compatibility
  shim describing same-path delegation to _migrate_legacy_kimi_skills_dir.
- test_presets: clarify that the dotted-skill test exercises legacy naming
  under the current .kimi-code/ base, not the legacy .kimi/ location.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* fix(kimi): harden legacy KIMI.md→AGENTS.md context migration

- Skip context-file migration when the agent-context extension is
  disabled, matching upsert/remove_context_section opt-out behavior so
  an opted-out project's KIMI.md/AGENTS.md are left untouched.
- Safely skip (instead of raising) on filesystem edge cases: unreadable
  or non-UTF-8 KIMI.md, and AGENTS.md existing as a non-file/unwritable.
- Refuse to migrate a corrupted managed section (single marker, or end
  before start) so a partial managed block is never copied into
  AGENTS.md; KIMI.md is preserved for manual repair.

Add regression tests for all three cases.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* Potential fix for pull request finding

Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>

* Fix for pull request finding

Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>

* Approve fix for pull request finding

Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>

* chore(kimi): revert CHANGELOG.md edit (auto-generated)

The CHANGELOG is generated from merged PR titles, so a hand-written entry
is redundant; it was also placed under the already-released 0.10.2 section,
which would make those release notes historically inaccurate. Revert to
match main per maintainer feedback.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* test(kimi): skip symlink-safety tests when symlinks are unavailable

The Kimi legacy-migration safety tests create symlinks to assert that
migration/teardown never follow them out of the project. Symlink creation
fails on Windows without the create-symlink privilege and in some restricted
CI sandboxes, so these tests errored during setup instead of skipping.

Wrap every symlink_to() call in a shared _symlink_or_skip() helper that
pytest.skip()s on OSError/NotImplementedError, matching the guard pattern
already used by one of these tests. Verified on Windows: the 6 symlink tests
now skip cleanly (51 passed, 6 skipped) instead of erroring.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* fix(kimi): reject symlinked skills destination before install

Add a destination symlink pre-check in KimiIntegration.setup() before
super().setup() writes any SKILL.md. The base class only rejects a
destination that escapes project_root after resolve(), so an in-tree
symlinked .kimi-code/.kimi-code/skills (e.g. `-> .`) would still
misdirect writes into an unintended in-tree location (./skills/).

Extract the symlink-component walk into a shared _has_symlinked_component()
helper and reuse it from _is_safe_legacy_dir(). Add a regression test.

Also clarify that --migrate-legacy only migrates KIMI.md -> AGENTS.md when
the agent-context extension is enabled, in the CLI help text and the
integration docs.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* Refactor formatting and simplify logic in Kimi integration

* fix(kimi): reject symlinked target dir during legacy skills migration

When the migration destination already exists, guard against a symlinked
(or non-directory) target_dir before comparing SKILL.md bytes, so the
comparison never follows a link outside the project root. Also skip a
missing/non-file target SKILL.md explicitly.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>
Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>
 2026-06-24 15:22:08 -05:00
Omar 44ef11aa18 feat(integrations): add omp support (#3107) 
* feat(integrations): add omp support

* Update updated_at timestamp

* refactor(integrations): delegate omp build_exec_args to base, register in issue templates

Inherit MarkdownIntegration.build_exec_args so omp picks up shared CLI
contract changes (requires_cli gating, extra-args ordering, --model
handling) automatically; only specialize the --mode json flag.

Also add Oh My Pi / omp to the issue-template agent lists so
test_issue_template_agent_lists_match_runtime_integrations passes.

* fix(integrations): use --print + positional prompt for omp argv

OMP's CLI parser treats `-p`/`--print` as a boolean (one-shot mode)
and consumes the prompt as a positional message; the previous
inherited `-p <prompt>` shape worked by accident only because `-p`
ignores its next token. Build the argv explicitly with flags first
and the prompt as a trailing positional, matching upstream args.ts.
 2026-06-24 13:44:34 -05:00
Ali jawwad 0a126256e0 feat: add Firebender integration (Android Studio / IntelliJ) (#3077) 
* feat: add Firebender integration (Android Studio / IntelliJ)

Firebender (https://firebender.com/) is an AI coding agent for Android
Studio and IntelliJ. It reads project-local custom slash commands from
.firebender/commands/*.mdc and project rules from .firebender/rules/*.mdc.

Add a FirebenderIntegration (MarkdownIntegration) that installs the
speckit command templates as .mdc command files and writes the managed
context section into .firebender/rules/specify-rules.mdc. command_filename
is overridden so init-time commands also use the .mdc extension Firebender
requires. Register it in the integration registry, add the catalog entry
and docs row, and add an integration test covering the .mdc command output.

Closes #1548

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* feat: address review - bump catalog updated_at and list firebender as multi-install safe

Bump the catalog top-level updated_at to reflect the new entry, and add firebender (with its .firebender/commands + .firebender/rules/specify-rules.mdc isolation paths) to the 'currently declared multi-install safe integrations' table in the docs.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
 2026-06-23 08:01:00 -05:00
meymchen 6a3ee9b64e feat: add ZCode (Z.AI) integration (#3063) 
* feat: add ZCode (Z.AI) integration

Add a skills-based integration for ZCode, Z.AI's Claude-Code-style
agent. ZCode uses the same SKILL.md layout as Claude Code, so spec-kit
installs workflows into .zcode/skills/speckit-<name>/SKILL.md, invoked
in chat as $speckit-<name>.

- ZcodeIntegration(SkillsIntegration) with .zcode/ folder and --skills option
- Register in INTEGRATION_REGISTRY
- Catalog entry (tags: cli, skills, z-ai)
- Tests via SkillsIntegrationTests mixin
- Document in integrations reference and README

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* fix: render $speckit-* invocations for ZCode skills

ZCode is documented as a skills agent invoked with $speckit-<command>,
but the central invocation rendering only special-cased codex, so
specify init Next Steps and extension hooks rendered the dotted
/speckit.<command> form instead.

Centralize the $speckit-* decision in a DOLLAR_SKILLS_AGENTS set with an
is_dollar_skills_agent() helper, and route both init Next Steps and
HookExecutor._render_hook_invocation through it. Add ZCode invocation
regression tests mirroring the existing Codex/Kimi coverage.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>
 2026-06-22 12:14:18 -05:00
Ahmet TOK 1150d32aee Add Zed integration (#2780) 
* feat: add Zed integration

* fix: update integrations stats grid to 31 for consistency

* fix: address Copilot review feedback

- Remove non-actionable --skills flag from ZedIntegration (Zed is always
  skills-based, like Agy)
- Align zed_skill_mode predicate with ai_skills for consistency across
  init output and hook rendering
- Consolidate claude/cursor/zed slash-skill return blocks in
  _render_hook_invocation to reduce duplication
- Override test_options_include_skills_flag for Zed (no --skills flag)

* Potential fix for pull request finding

Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>

* fix: address Copilot review round 2

- Make zed_skill_mode unconditional in hook rendering (Zed is always
  skills-based, no --skills option)
- Add test_init_persists_ai_skills_for_zed that exercises the actual
  CLI init path and verifies HookExecutor renders /speckit-plan
  without manual init-options manipulation

* Potential fix for pull request finding

Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>

* fix: address copilot review feedback for zed integration

- Update integration count from 31 to 33 in docs/index.md (32 integrations + Generic)
- Make zed_skill_mode unconditional to match extensions.py behavior
- Consolidate slash-skill integrations into a set for consistency
- Move os import to module level in test_integration_zed.py

* fix: refine slash-skill logic and ai-skills validation

- Fix slash-skill integrations: Claude/Cursor require ai_skills=true; Zed/Agy/Devin are always skills
- Allow --ai-skills with --integration (not just --ai) to fix validation error

* fix: remove unused variables and update ai-skills help text

- Add agy_skill_mode and devin_skill_mode variables to fix F841 lint error
- Use all skill mode variables in the slash-skill conditional check
- Update --ai-skills help text to reflect it works with --integration too

* fix: add trae_skill_mode to hook invocation for consistency

Trae is a SkillsIntegration like Zed/Agy/Devin, so it should also be treated
as always-skills-based in hook invocation rendering.

* fix: make Agy always skills-based for consistency

AgyIntegration is a SkillsIntegration subclass with no --skills option,
so it should be treated as always skills-based (like Zed, Devin, Trae).
This aligns init.py skill mode detection with extensions.py hook rendering.

* fix: gate agy_skill_mode and refactor _render_hook_invocation to use sets

Addressed Copilot review comments:

- Restored _is_skills_integration guard on agy_skill_mode in init.py
  to be defensive about runtime integration type.
- Refactored _render_hook_invocation() in extensions.py to use
  always_slash/conditional_slash frozensets instead of individual
  per-agent booleans, eliminating unused variables (F841) and making
  it harder for conditions to drift between integrations.
- Centralized slash-skill determination so adding a new unconditional
  slash-skill integration is a one-key addition.

* fix: address latest Copilot review comments

- Added copilot to CONDITIONAL_SLASH_AGENTS for consistent
  hook invocation rendering with init.py
- Moved always_slash/conditional_slash frozensets to module
  scope to avoid per-call reallocation
- Replaced manual os.chdir() with monkeypatch.chdir() in test
- Overrode test_options_include_skills_flag for Zed (no --skills)

* fix: address latest Copilot review comments

- Removed redundant local import yaml in _register_extension_skills
  (yaml is already imported at module scope)
- Split --ai-skills usage hint into two separate print statements
  for better readability
- Changed integrations count from '33' to '30+' to avoid future drift

* fix: re-add _is_skills_integration definition lost in merge

The _is_skills_integration variable was accidentally dropped during the
web UI merge resolution of upstream/main's removal of legacy --ai flags.
Re-added the definition via isinstance(resolved_integration, SkillsIntegration)
check so that skill-mode booleans work correctly.

* fix: gate zed_skill_mode on _is_skills_integration for consistency

Aligns zed_skill_mode with the other skills-based agents (codex, claude,
cursor-agent, copilot) which all use _is_skills_integration gating.
Since ZedIntegration extends SkillsIntegration, behavior is unchanged.

* fix: remove unused claude_skill_mode and cursor_skill_mode locals in _render_hook_invocation

These variables became unused after the refactor to ALWAYS_SLASH_AGENTS /
CONDITIONAL_SLASH_AGENTS sets. Claude and Cursor-Agent are now handled by the
CONDITIONAL_SLASH_AGENTS path, so the separate boolean locals are dead code.

Fixes ruff F841 and addresses Copilot review feedback that was repeated across
multiple review rounds.

* fix: align agy/trae invocation format in init next-steps with hook rendering and build_command_invocation

- Moved agy and trae from '-<name>' (dollar/Codex format) to
  '/speckit-<name>' (slash format) in _display_cmd() to match:
  - HookExecutor._render_hook_invocation() (ALWAYS_SLASH_AGENTS for trae,
    CONDITIONAL_SLASH_AGENTS for agy)
  - SkillsIntegration.build_command_invocation() (default: /speckit-<name>)
- The '$' prefix is specific to Codex; all other skills agents use '/'.

* fix: address Copilot review comments on hook invocation consistency

- Add is_slash_skills_agent() helper to extensions.py to centralize the
  agent-to-invocation-format mapping, reducing drift risk between
  HookExecutor._render_hook_invocation() and init.py _display_cmd()
- Use the shared helper in both locations; init.py now imports and
  delegates to is_slash_skills_agent() instead of maintaining its own
  per-agent boolean matrix
- Fix test_hooks_render_skill_invocation to use ai_skills=False,
  proving Zed renders /speckit-<name> unconditionally
- Add parameterized TestSlashSkillsSets covering all agents in
  ALWAYS_SLASH_AGENTS and CONDITIONAL_SLASH_AGENTS with ai_skills
  both true and false

* fix: address Copilot review comments on type safety and test API

- Make is_slash_skills_agent() accept str | None to match its call sites
  (init_options.get("ai") can return None)
- Refactor TestSlashSkillsSets to use public execute_hook() API instead of
  private _render_hook_invocation() method

* fix: address Copilot review comments on typing and naming clarity

- Add from __future__ import annotations to extensions.py so PEP 604
  unions (str | None) are safe regardless of Python version
- Add clarifying _ai_skills_enabled local variable in init.py's
  _display_cmd() to make the semantic meaning explicit when passing it
  to is_slash_skills_agent()

* fix: move invocation-style logic into shared _invocation_style module

- Extract ALWAYS_SLASH_AGENTS, CONDITIONAL_SLASH_AGENTS, and
  is_slash_skills_agent() from extensions.py into new _invocation_style.py
  module, eliminating the awkward init.py -> extensions.py import
  dependency for invocation-style decision logic
- Both HookExecutor._render_hook_invocation() and init.py _display_cmd()
  now import from the shared module instead of one subsystem importing
  from the other
- Revert /SKILL.md change: the leading slash is semantically significant
  (path component vs filename suffix)

* fix: add None guard before i.options() in test_options_include_skills_flag

get_integration() returns IntegrationBase | None, so i.options()
is a type error without a None check.

* fix: override test_options_include_skills_flag for Zed (always skills, no --skills flag)

Zed is always skills-based and doesn't expose a --skills option.
Override the inherited base test to assert --skills is absent.

* fix: rename test and skip inherited test_options_include_skills_flag for Zed

- Skip inherited test_options_include_skills_flag (not applicable — Zed
  is always skills-based with no --skills flag)
- Add test_options_do_not_include_skills_flag with correct name matching
  the assertion (--skills is absent)

* fix: add defensive non-string check in is_slash_skills_agent

Reject non-string values for selected_ai to prevent TypeError from
set membership checks when persisted init-options contain corrupted
data (e.g. list or dict instead of string).

---------

Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>
 2026-06-16 17:29:08 -05:00
Pascal THUET f65d9f9382 feat(integration): add status reporting (#2674) 
* feat(integration): add status reporting

* docs(integration): include status in query command docstring

* fix(integration): handle Windows extended-length paths in status containment

On Windows, os.readlink() (and sometimes Path.resolve()) return paths with
the \\?\ extended-length prefix. Comparing such a target against a plain
project root via Path.relative_to() spuriously fails, so an in-project
dangling symlink was classified as `invalid` instead of `missing` — failing
test_status_treats_dangling_symlink_as_missing and the windows-style variant
on the Windows CI runners.

Centralize the containment check in _is_within_project() and strip the
\\?\ / \\?\UNC\ prefix from both sides before relative_to(). Add portable
regression tests for the prefix-stripping helper and the containment contract.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* Potential fix for pull request finding

Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>

* test(integration): restore top-level pytest import after rebase

A three-way merge / rebase onto main silently dropped the module-level
`import pytest` from test_integration_subcommand.py: main reorganized the
import block without it (using only a local `import pytest as _pytest`),
while this branch added top-level fixtures and `pytest.skip`/`pytest.raises`
usage. The overlapping import-hunk edits resolved by dropping the import,
breaking collection with `NameError: name 'pytest' is not defined` on every
runner. Re-add the import in the third-party group.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* test(integration): fix Windows UNC path assertion in status helper test

`test_strip_extended_length_prefix_normalizes_windows_paths` compared the
str() form of the helper's output against a hand-built string. On Windows,
pathlib renders a UNC root with a trailing separator (`\\server\share\`),
so the exact string match failed there (`\\server\share\` != `\\server\share`)
even though `_strip_extended_length_prefix` behaves correctly — the trailing
separator is irrelevant to the `relative_to` containment check it feeds.

Compare Path objects (semantic equality) instead of exact strings so the
assertion holds on both POSIX and Windows. No production code change needed.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* fix(integration): make shared-manifest remediation specify --integration

The fallback `_manifest_suggestion` for the shared `speckit` manifest (used
when no usable default integration is recorded) suggested
`specify init --here --force`, which can trigger interactive integration
selection. For CI/agent consumers of `integration status`, surface an
explicit `--integration <key>` placeholder, matching the file's existing
`<key>` suggestion style.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>
 2026-06-09 07:20:43 -05:00
Samir Abed 34ce66139e feat: add support for rovodev (#2539) 
* feat: add support for rovodev

* fixup! feat: add support for rovodev

* fixup! feat: add support for rovodev

* fixup! feat: add support for rovodev

* fixup! feat: add support for rovodev

* fixup! feat: add support for rovodev

* fixup! feat: add support for rovodev

* fixup! feat: add support for rovodev

* fixup! feat: add support for rovodev

* fixup! feat: add support for rovodev

* fixup! feat: add support for rovodev

* fixup! feat: add support for rovodev
 2026-06-04 11:34:05 -05:00
Teknium ed10b32014 docs: list Hermes in supported integrations table (#2768) 
The Hermes Agent integration ships in the CLI (src/specify_cli/integrations/hermes/)
and is registered in the catalog, but the supported-agents table in the
integrations reference omitted it. Add the row so the docs match the shipped
integration.
 2026-06-01 15:04:04 -05:00
Pedro Barbosa 44aac9f6e4 feat: add native Cline integration (#2508) 
* test: strip ansi to make asserts work

* feat: add native Cline integration
 2026-06-01 11:20:48 -05:00
Eldar Shlomi cba00ab9a5 fix(kiro-cli): replace literal $ARGUMENTS with prose fallback (#2482) 
* fix(kiro-cli): replace literal $ARGUMENTS with prose fallback

Kiro CLI file-based prompts do not natively substitute any
argument placeholder (kirodotdev/Kiro#4141, kiro.dev/docs/cli
manage-prompts), so the literal "$ARGUMENTS" set in
KiroCliIntegration.registrar_config["args"] reached the model
verbatim and broke the prompt — every parameterized SpecKit
command under Kiro CLI was unusable.

Replace the placeholder with a prose fallback that instructs
the model to take its argument from the user's next message,
mirroring the convention used by other integrations whose
target CLI lacks native argument injection.

Add two regression tests in TestKiroCliIntegration:
  - test_rendered_prompts_do_not_contain_raw_arguments
  - test_rendered_prompts_contain_kiro_arg_placeholder
and override the inherited test_registrar_config so it does
not require args == "$ARGUMENTS".

Fixes #1926

* test(kiro-cli): tighten args regression guard + document quirk

Address review feedback on PR #2482.

Two changes that bracket the original bug fix from both sides — code AND
documentation:

1. Test layer (Copilot finding at lines 27, 56)

The previous test_registrar_config asserted only that args != "$ARGUMENTS"
and that args is truthy. That would silently pass if a future change
swapped $ARGUMENTS for $INPUT, {{userMessage}}, <args>, or any other
unsubstituted placeholder syntax — defeating the regression guard for
issue #1926.

Replace with a dual-layer guard:

  - test_registrar_config_args_is_exact_prose_fallback pins args to the
    imported _KIRO_ARG_FALLBACK constant. Wording drift now requires a
    deliberate paired commit (production constant + test).

  - test_registrar_config_args_does_not_look_like_a_placeholder_token is
    an independent regression guard built on a 7-pattern regex set
    covering Bash ($X, ${X}, ${X:-default}), Mustache/Handlebars/Jinja
    ({{X}}, {{{X}}}), Liquid/Jinja control ({% %}), Python str.format /
    .NET ({0}, {var}), angle-bracket (<X>), and Windows (%X%). Patterns
    are anchored to the full string so legitimate prose mentioning a
    placeholder ("the {{magic}} of placeholders") is not flagged.

Also fix the line-56 tautology by importing _KIRO_ARG_FALLBACK directly
into test_rendered_prompts_contain_kiro_arg_placeholder, instead of
reading the constant back from registrar_config["args"]. The test now
verifies the FALLBACK STRING reaches the rendered output, independent
of the integration's own config staying correct.

2. Docs layer (mnriem CHANGES_REQUESTED)

The Kiro CLI row in docs/reference/integrations.md only documented its
alias. Update the notes column to lead with the limitation — Kiro CLI
does not substitute $ARGUMENTS in file-based prompts, so Spec Kit ships
a prose fallback at render time — with inline links to upstream Kiro
"Manage prompts" docs and issue #1926. Style follows the Pi row
("limitation first, alias preserved at end").

Refs #1926
 2026-05-12 07:48:25 -05:00
Asish Kumar cd951acb9e docs: clarify CLI upgrade discovery (#2519) 2026-05-12 07:19:40 -05:00
qiyang.yuan f5b675e9ee feat: Add lingma support (#2348) 
* add lingma support

* fix

* fix context file

* Update CONTEXT_FILE path in test integration

* fix IntegrationOption.default

* fix IntegrationOption.defaultfix

* fix: address Copilot review feedback

- Add blank line after __future__ import (PEP 8)
- Remove trailing whitespace at end of lingma/__init__.py
- Bump integrations/catalog.json updated_at timestamp
- Add Lingma to supported agent list in README.md

* fix: address Copilot review feedback (round 4)

- Reword module docstring: Lingma is a brand-new skills-only integration
  with no prior command-mode history, so 'deprecated since v0.5.1'
  wording (copied from Trae) was misleading
- Remove Lingma from README CLI-tool check list: Lingma is IDE-based
  (requires_cli=False) and is explicitly skipped by specify init /
  specify check tool detection
 2026-05-06 16:12:13 -05:00
Pascal THUET 38fd1f6cc2 Support controlled multi-install for safe AI agent integrations (#2389) 
* support controlled multi-install integrations

* fix: harden multi-install integration state

* refactor: isolate integration runtime helpers

* fix: address copilot review feedback

* fix: address follow-up copilot feedback

* fix: tighten integration switch semantics

* fix: address final copilot review feedback

* fix: harden integration manifest read errors

* fix: refuse symlinked shared infra paths

* test: filter expected self-test preset warning

* test: address copilot review nits

* refactor: centralize safe shared infra writes

* fix: use no-follow writes for shared infra

* fix: keep default integration atomic on template refresh

* fix: harden shared infra error paths

* fix: preflight shared infra and future state schemas

* fix: support nested shared scripts during preflight

* test: tolerate wrapped schema error output

* fix: use safe default mode for shared text writes

* fix: use posix paths in shared skip output

* fix: share project guard for integration use

* fix: centralize spec-kit project guards

* fix: use posix project paths in cli output

* fix: harden shared manifest and upgrade refresh
 2026-05-01 11:54:41 -05:00
vishal-gandhi 237e918f11 feat(integrations): add Devin for Terminal skills-based integration (#2364) 
* feat(integrations): add Devin for Terminal skills-based integration

- Register DevinIntegration as a SkillsIntegration with .devin/skills/ layout
- Add catalog entry, docs row, and supported-agents listing
- Display /speckit-<command> hyphen syntax in init "Next Steps" panel
  (matches Claude/Cursor/Copilot skills mode, since Devin invokes skills
  by directory name)

Closes #2346

* fix(devin): implement -p non-interactive dispatch; clarify skills comment

Addresses Copilot review on PR #2364:

- Override build_exec_args() in DevinIntegration to emit
  'devin -p <prompt> [--model X]' for non-interactive text dispatch
  (verified Devin CLI supports -p / --print). Returns None when
  output_json=True since Devin has no structured-output flag, so
  CommandStep workflows that require JSON cleanly raise
  NotImplementedError instead of crashing on an unknown CLI flag.
  requires_cli=True is retained for tool detection.

- Extend the skills-integrations enumeration comment in
  specify_cli/__init__.py to include copilot and devin so the
  comment matches the code below it.

* fix(devin): always return exec args; document plain-text stdout

Addresses third Copilot review comment on PR #2364.

Returning None from build_exec_args() when output_json=True
incorrectly used the codebase's IDE-only sentinel: workflow
CommandStep checks 'impl.build_exec_args("test") is None' to
detect non-dispatchable integrations (test_workflows.py exercises
this with WindsurfIntegration). The previous implementation made
Devin appear non-dispatchable to all command steps even though it
runs fine via 'devin -p'.

Always return the args list. When output_json is requested, Devin
is still dispatched and returns plain-text stdout instead of
structured JSON; the docstring documents this explicitly.

* docs(devin): include claude in skills-integrations enumeration comment

Addresses Copilot review on PR #2364: the comment listing skills
integrations omitted Claude, which is also a SkillsIntegration
subclass. Updated to keep the comment accurate for future readers.

* test(devin): add build_exec_args regression tests; bump catalog updated_at

Addresses Copilot review on PR #2364, per @mnriem's request to
'address the Copilot feedback, especially the testing ask':

- tests/integrations/test_integration_devin.py: add TestDevinBuildExecArgs
  with three regression assertions:
    * build_exec_args returns args (not the None IDE-only sentinel)
    * --output-format is never emitted, regardless of output_json
    * --model flag is passed through correctly
- integrations/catalog.json: bump top-level updated_at to reflect the
  Devin entry addition so downstream catalog consumers can detect the
  change reliably.
 2026-04-29 16:22:06 -05:00
Manfred Riem 02a1d610df docs: add workflows reference, reorganize into docs/reference/, and add --version flag (#2244) 
* docs: add workflows reference, reorganize into docs/reference/, and add --version flag

- Move integrations.md, extensions.md, presets.md into docs/reference/
- New docs/reference/workflows.md: command reference for all workflow
  commands, built-in SDD Cycle workflow with Mermaid diagram, step types,
  expressions, input types, state/resume, and FAQ
- Rename workflow input feature_name to spec with prompt 'Describe what
  you want to build' to match speckit.specify command terminology
- Add --version / -V flag to root specify command with tests
- Update docs/toc.yml, README.md links, and docs/upgrade.md cross-reference
  to use reference/ paths
- Add workflow command to README CLI reference table

* docs: update speckit_version requirement to >=0.7.2 in workflow example
 2026-04-16 13:34:08 -05:00